| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 11,598,650 – 11,598,758 |
| Length | 108 |
| Max. P | 0.545224 |
| Location | 11,598,650 – 11,598,758 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 76.16 |
| Mean single sequence MFE | -21.86 |
| Consensus MFE | -14.16 |
| Energy contribution | -14.69 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.17 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.545224 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11598650 108 - 22407834 -----UAUGCGGCUCCAAUUAGCUGACGAUUGACUUGUCAAAACAUCAAUUAUAACUGACACUCGUCGAACGUUUCACGCUUUCUUGGCAGCUCCG------C-CAUUUCCACGUCGCCC -----...(((((.......(((.((((.(((((.(((((................)))))...))))).))))....)))....((((......)------)-)).......))))).. ( -25.69) >DroPse_CAF1 50959 103 - 1 -----CAUG-AGCUCCAAUUAGCUGACAAUUGACUUGUCAAAACAUCAAUUAUAACUGACAUUCGUCGAAUGUUUCUCGGUUUCUUGGCAACCACG------CCCCCCGC-----CCCAC -----....-((((......))))((((.(((((.(((((................)))))...))))).))))....(((.....(((......)------))....))-----).... ( -19.49) >DroEre_CAF1 83768 90 - 1 -----UAUGCGGCUCCAAUUAGCUGACGAUUGACUUGUCAAAACAUCAAUUACGACUGACACUCGUCGAAUGUUUCACGGUUUCUUGGCGGCUC-------------------------C -----.....((((((((..(((((..((((((..(((....))))))))).((((........)))).........)))))..)))).)))).-------------------------. ( -21.30) >DroYak_CAF1 54860 114 - 1 -----UAUGAGGCUUCAAUUAGCUGACGAUUGACUUGUCAAAACAUCAAUUACGACCGACACUCGUCGAAUGUUUCACGCUUUCUUGGCAGCUCCUCCUCUUC-CAUUUCCACUCCGCCC -----...(..(((((((..((((((.((((((..(((....)))))))))(((..((((....))))..))).))).)))...)))).)))..)........-................ ( -19.10) >DroAna_CAF1 66571 105 - 1 GUAGGUGUGCUAAUCCAAUUAGCUGACAAUUGACUUGUCAAAACAUCAAUUAUAACUGACAUUCGGCGAAUGUUUUACGGUUUCUUGGCCUGGCCA------C-C----CAACGCC---- ...((((.((((..((((..(((((..((((((..(((....)))))))))......(((((((...)))))))...)))))..))))..))))))------)-)----.......---- ( -28.20) >DroPer_CAF1 53349 102 - 1 -----CAUG-AGCUCCAAUUAGCUGACAAUUGACUUGUCAAAACAUCAAUUAUAACUGACAUUCGUCGAAUGUUUCUCGGUUUCUUGGCAACCACC------C-CACCUC-----CGCCC -----....-....((((..((((((((.(((((.(((((................)))))...))))).))....))))))..))))........------.-......-----..... ( -17.39) >consensus _____UAUGCGGCUCCAAUUAGCUGACAAUUGACUUGUCAAAACAUCAAUUAUAACUGACACUCGUCGAAUGUUUCACGGUUUCUUGGCAGCUCCG______C_CA__UC_____CGCCC ...........(((((((..((((((((.(((((.(((((................)))))...))))).)))....)))))..)))).)))............................ (-14.16 = -14.69 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:21 2006