Locus 398

Sequence ID 2L_DroMel_CAF1
Location 1,217,177 – 1,217,269
Length 92
Max. P 0.655238
window631

overview

Window 1

Location 1,217,177 – 1,217,269
Length 92
Sequences 4
Columns 92
Reading direction reverse
Mean pairwise identity 92.34
Mean single sequence MFE -13.64
Consensus MFE -11.50
Energy contribution -11.50
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.58
Structure conservation index 0.84
SVM decision value 0.25
SVM RNA-class probability 0.655238
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1217177 92 - 22407834
CCCCAUCCACACGUGCUUAAAGCUCAGACUCACACACACUCACACACUCGCACAAUGCCGGCCAUUAAACACGCAUUCUUUGGCCAUAGAAA
............((((.................................))))......(((((................)))))....... ( -11.50)
>DroSim_CAF1 12826 92 - 1
CCCCAUCCACACGUGCUUAAAGCUCAGACUCACACACACUCACACACUCGCACAAUGCCGGCCAUUAAACACGCAUUCUUUGGCCAUAGAAA
............((((.................................))))......(((((................)))))....... ( -11.50)
>DroEre_CAF1 12559 88 - 1
CCCCAACCACACGUGCUUAAAGCCCAGACUCACUCAC----ACACACUCGCACAAUGCCGGCCAUUAAGCACGCAUUCUUUGGCCAUAGAAA
..((((.....(((((((((.(((..((.....))..----........((.....)).)))..)))))))))......))))......... ( -18.40)
>DroYak_CAF1 13626 84 - 1
CCCCAUCCACACGUGCUUAAAGCUCAGACU----CGC----ACACACUCGCACAAUGCCGGCCAUUAAACACGCAUUCUUUGGCCAUAGAAA
............((((..............----.))----))....((((.....)).(((((................)))))...)).. ( -13.15)
>consensus
CCCCAUCCACACGUGCUUAAAGCUCAGACUCACACAC____ACACACUCGCACAAUGCCGGCCAUUAAACACGCAUUCUUUGGCCAUAGAAA
............((((.................................))))......(((((................)))))....... (-11.50 = -11.50 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:58 2006