Locus 3979

Sequence ID 2L_DroMel_CAF1
Location 11,597,076 – 11,597,188
Length 112
Max. P 0.659715
window6276

overview

Window 6

Location 11,597,076 – 11,597,188
Length 112
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 75.40
Mean single sequence MFE -27.90
Consensus MFE -14.80
Energy contribution -16.22
Covariance contribution 1.42
Combinations/Pair 1.32
Mean z-score -1.70
Structure conservation index 0.53
SVM decision value 0.27
SVM RNA-class probability 0.659715
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11597076 112 + 22407834
ACACACACGUAUG--------UAUAUAUGCUCGGGUUUGUUCAGCAAUUAUGUAAAUGUCCCGGGCAGACAUGCUAAUACAUUUUUCGGUAAAUAAUACAUUUUCGCGGCAGCUUUUAAU
........(((((--------(.....((((((((..((((..(((....))).)))).)))))))).))))))...............................((....))....... ( -22.50)
>DroPse_CAF1 48515 96 + 1
ACA--------------CUCGCAUUUGUGCAACUGUUUGUUUAACAAUUAUGCAAAUGUU----GCAUACAUUUUAGUCUGUUUUUUGUUUUGU------UUUUCGUGGCAGCCUAAAAA
...--------------........((((((((.((((((.((.....)).)))))))))----)))))..((((((.(((((...((......------....)).))))).)))))). ( -20.20)
>DroSec_CAF1 51247 120 + 1
ACACACACGUGUGUGUAUCUGUAUCUAUGCCCGGGUUUGCUGAGCAAUUAUGUAAAUGUCCCGGGCAGACAUGCUAAUACAUUUUUCGGUAAAUAAAACAUUUUCGCGGCAGGUUUUAAU
(((((....)))))((((..((((...((((((((((((((((....))).)))))...))))))))...))))..)))).............((((((.............)))))).. ( -34.32)
>DroSim_CAF1 53910 119 + 1
-CACACACGUGUGUGUAUCUGUAUCUAUGCCCGGGCUUGUUGAGCAAUUAUGUAAAUGUCCCGGGCAGACAUGCUAAUACAUUUUUCGGUAAAUAAAACAUUUUCGCGGCAGAUUUUAAU
-(((((....))))).((((((.....((((((((..((((..(((....))).)))).))))))))....(((..(........)..))).................))))))...... ( -30.50)
>DroEre_CAF1 82229 107 + 1
-------C------GUAUCUGCAUCUGUGCUCGGGUUUGUUAAGCAAUUAUGCAAAUGUCCCGGGCAGACAUGCUAAUACAUUUUUCGGUAAAUAAAACAUAUUCGCGGCAGCUUUUAAU
-------.------((((..((((.(.((((((((((((((((....))).)))))...)))))))).).))))..)))).........................((....))....... ( -29.50)
>DroYak_CAF1 53250 111 + 1
-------CG--AAUGUAUCUGUAUCUAUGCUCGGGUUUGUAGAGCAAUUAUGCAAAUGUCCCGGGCAGACAUGCUAAUACAUUUUUCGGUAAAUAAAACAUUUUCGCGGCAGCAUUUAAU
-------.(--(((((((..((((...((((((((((((((((....)).))))))...))))))))...))))..)))))))).....................((....))....... ( -30.40)
>consensus
_CA____CG__UG_GUAUCUGUAUCUAUGCUCGGGUUUGUUGAGCAAUUAUGCAAAUGUCCCGGGCAGACAUGCUAAUACAUUUUUCGGUAAAUAAAACAUUUUCGCGGCAGCUUUUAAU
..............((((..((((...((((((((........(((....)))......))))))))...))))..))))........................................ (-14.80 = -16.22 +   1.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:20 2006