Locus 3974

Sequence ID 2L_DroMel_CAF1
Location 11,589,303 – 11,589,405
Length 102
Max. P 0.508123
window6265

overview

Window 5

Location 11,589,303 – 11,589,405
Length 102
Sequences 3
Columns 108
Reading direction reverse
Mean pairwise identity 86.02
Mean single sequence MFE -24.29
Consensus MFE -17.75
Energy contribution -17.42
Covariance contribution -0.33
Combinations/Pair 1.16
Mean z-score -1.84
Structure conservation index 0.73
SVM decision value -0.05
SVM RNA-class probability 0.508123
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11589303 102 - 22407834
CAAUGAGUUGCUUUCUUCGGGUAUGCGCAUUCAAGGGU--UUCAAAAUGGCAACCCUUCUUUAUAUGUCACAAUAAAUGAAAGUUCACUGUGUACCCAUUCAAA----
..................((((((((((((..((((((--(((.....)).)))))))......)))).........(((....)))..)))))))).......---- ( -20.80)
>DroSec_CAF1 43393 105 - 1
C-AUGAGGUGAUUUCUUCGGGUAUGCGCAUUUAAAGGU--UUUAAACCGGCAACACUACUGUAUAUGCCACAAUAAAUGAAAGUACACUGUAUACCCAUUGAAAUGUA
.-..((((......))))((((((((.((((((..(((--.....)))((((..((....))...))))....))))))..((....))))))))))........... ( -27.00)
>DroSim_CAF1 46068 108 - 1
CAAUGAGGUGAUUUCUUCGGGUAUGCACAUUUAAGGGUAUUUUAAAACGGCAACACUACUCUAUAUGCCACAAUAAAUGAAAGUACACUGUAUACCCAUUGAAAUGUA
((((((((......))))((((((((.((((((..(((((........(....)..........)))))....))))))..((....))))))))))))))....... ( -25.07)
>consensus
CAAUGAGGUGAUUUCUUCGGGUAUGCGCAUUUAAGGGU__UUUAAAACGGCAACACUACUCUAUAUGCCACAAUAAAUGAAAGUACACUGUAUACCCAUUGAAAUGUA
....((((......))))(((((((((.....................((((.............)))).......((....))....)))))))))........... (-17.75 = -17.42 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:09 2006