Locus 3972

Sequence ID 2L_DroMel_CAF1
Location 11,588,639 – 11,588,731
Length 92
Max. P 0.900604
window6262

overview

Window 2

Location 11,588,639 – 11,588,731
Length 92
Sequences 5
Columns 94
Reading direction reverse
Mean pairwise identity 76.02
Mean single sequence MFE -21.15
Consensus MFE -5.63
Energy contribution -7.15
Covariance contribution 1.52
Combinations/Pair 1.10
Mean z-score -2.03
Structure conservation index 0.27
SVM decision value 1.01
SVM RNA-class probability 0.900604
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11588639 92 - 22407834
GAA-AAGCAAAGUAAAUGCAAAGCCAGAAACAAAGUCGUUCGAAAGCAUCGAGUCCCAGCCAAAAGUGUAUCUCAUUUGUGUUUUCGU-UUUCA
(((-(((((.......))).....................(((((((((.(((.....((.....))....)))....))))))))))-)))). ( -15.00)
>DroPse_CAF1 43245 73 - 1
AAAACAGCAAAAAAAAAACAAA----AAAA------CGAG--GAAGCGG---------CUAAAAAAUGUAUCUCAUUUGGGUUUUCAUUUUGCA
......((((((..(((((...----.(((------.(((--(.....(---------(........)).)))).)))..)))))..)))))). ( -12.50)
>DroSec_CAF1 42737 93 - 1
GAAAAAGCAAAGUAAAUGCAAAGCCAGAAACAAAGUCGAUGGAAAGCAUCGAGUCCCAGGCGAAAGCGUAUCUCAUUUGUGUUUUCGU-UUGCA
......((((((.(((((((((...(((.((....((((((.....)))))).......((....)))).)))..))))))))).).)-)))). ( -26.90)
>DroSim_CAF1 45419 93 - 1
GAAAAAGCAAAGUAAAUGCAAAGCCAGAAACAAAGUCGAUGGAAGGCAUCGAGUCCCAUGCGAAAGCGUAUCUCAUUUGUGUUUUCGU-UUGCA
......((((((.(((((((((...(((.((....((((((.....)))))).......((....)))).)))..))))))))).).)-)))). ( -26.90)
>DroEre_CAF1 73908 93 - 1
GAAAAAGCAAAGUAAAUGCAAAGCCAGAAGUAAAGUCGGGCGAGAGCAGAGAUUCCCGGCCGAAAACGUAUCUCAUUUGUGUUUUCGU-UUGCA
......((((((.(((((((((...(((.......((((.((.(((......))).)).)))).......)))..))))))))).).)-)))). ( -24.44)
>consensus
GAAAAAGCAAAGUAAAUGCAAAGCCAGAAACAAAGUCGAUCGAAAGCAUCGAGUCCCAGCCGAAAGCGUAUCUCAUUUGUGUUUUCGU_UUGCA
......((((.(.(((..((((...(((.((....(((......................)))....)).)))..))))..))).)...)))). ( -5.63 =  -7.15 +   1.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:06 2006