Locus 3970

Sequence ID 2L_DroMel_CAF1
Location 11,587,449 – 11,587,553
Length 104
Max. P 0.547453
window6259

overview

Window 9

Location 11,587,449 – 11,587,553
Length 104
Sequences 6
Columns 104
Reading direction reverse
Mean pairwise identity 96.47
Mean single sequence MFE -15.18
Consensus MFE -13.02
Energy contribution -13.85
Covariance contribution 0.83
Combinations/Pair 1.00
Mean z-score -1.47
Structure conservation index 0.86
SVM decision value 0.03
SVM RNA-class probability 0.547453
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11587449 104 - 22407834
AACUAAUCAAACUUUUUGCAGGAUAACCGAAACGACACAAAAUGCGCAAAACAAAUUGCUUUAUUUUCUAAUUCAGCUAGAAAGCAUUUUCCAUACUUUGUUUC
....................((....))(((((((...(((((((((((......)))).....((((((.......))))))))))))).......))))))) ( -16.30)
>DroSec_CAF1 41719 104 - 1
AACUAAUCAAACUUUUUGCAGGAUAGCCGAAACGACACAAAAUGCGCCAAACAAAUUACUUUAUUUUCUAAUUCAGCUAGAAAGCAUUUUCCAUACUUUGUUUC
....................((....))(((((((...((((((((.....)............((((((.......))))))))))))).......))))))) ( -11.20)
>DroSim_CAF1 44372 104 - 1
AACUAAUCAAACUUUUUGCCGGAUAACCGAAACGACACAAAAUGCGCAAAACAAAUUGCUUUAUUUUCUAAUUCAGCUAGAAAGCAUUUUCCAUACUUUGUUUC
....................((....))(((((((...(((((((((((......)))).....((((((.......))))))))))))).......))))))) ( -16.40)
>DroEre_CAF1 72547 104 - 1
AACUAAUCAAACUUUCUGCAGGAUAACCGAAACGACACAAAAUGCGCAAAACAAAUUGCUUUAUUUUCUAAUUCAGCUAGAAAGCAUUUUCCAUACUUUGUUUC
....................((....))(((((((...(((((((((((......)))).....((((((.......))))))))))))).......))))))) ( -16.30)
>DroYak_CAF1 43373 104 - 1
AACUAAUCAAACUUUUUGCAGGAUAACCAAAACGACACAAAAUGCGCAAAACAAAUUGCUUUAUUUUCUAAUUCAGCUAGAAAGCAUUUUCCAUACUUUGUUUC
....................((....)).((((((...(((((((((((......)))).....((((((.......))))))))))))).......)))))). ( -13.50)
>DroAna_CAF1 56303 104 - 1
AACUAAUCAAACUUUUUCCAGGAUAACCGAAACGACACAAAAUGCGCAAAACAAAUUGCUUUAUUUUCUAAUUCAGCUAGAAAGCAUUUUGCAGACUUUCUCUC
....................((....))((((.....((((((((((((......)))).....((((((.......)))))))))))))).....)))).... ( -17.40)
>consensus
AACUAAUCAAACUUUUUGCAGGAUAACCGAAACGACACAAAAUGCGCAAAACAAAUUGCUUUAUUUUCUAAUUCAGCUAGAAAGCAUUUUCCAUACUUUGUUUC
....................((....))(((((((...(((((((((((......)))).....((((((.......))))))))))))).......))))))) (-13.02 = -13.85 +   0.83)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:03 2006