Locus 397

Sequence ID 2L_DroMel_CAF1
Location 1,214,701 – 1,214,818
Length 117
Max. P 0.933248
window630

overview

Window 0

Location 1,214,701 – 1,214,818
Length 117
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 74.73
Mean single sequence MFE -23.80
Consensus MFE -18.60
Energy contribution -18.38
Covariance contribution -0.22
Combinations/Pair 1.24
Mean z-score -1.28
Structure conservation index 0.78
SVM decision value 1.23
SVM RNA-class probability 0.933248
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1214701 117 + 22407834
AAUAAUCUUG-UAUAUAUUUCCCUUACUCAUUCCAUUCAUCCAGGCCCACUGUGCAGUUCCGUCUCUGGCCGUGGCAAUUGCCACUUUUGGC--CCGGAUUGCAUCGUCGCCUUCAUUGU
..........-...............................((((..((.(((((((.(((.....(((((((((....)))))....)))--))))))))))).)).))))....... ( -31.40)
>DroSec_CAF1 10375 112 + 1
UAUAAUCUUG-UAUA-----CCCUUACUCAUUCUUUUCAUGCAGUCCCACUGUGCAGUUUCGUCUCUGGCCGUGGCAAUUGCCACUUUUGGU--CCGGAUUGCAUCGUCGCCUUCAUUGU
.........(-((..-----....)))...........(((((((((.(((....))).........(((((((((....)))))....)))--).)))))))))............... ( -24.70)
>DroSim_CAF1 10433 117 + 1
AAUAAUCUUG-UAUACAUUGCCCUUACUCAUUCCUUUCAUCCAAUUCCACUGUGCAGUUUCGUCUCUGGUCGUGGCAAUUGCCACUUUUGGU--CCGGAUUGCAUCGUCGCCUUCAUUGU
..........-.....................................((.((((((((.((...(..(..(((((....)))))..)..).--.)))))))))).))............ ( -21.50)
>DroEre_CAF1 9951 113 + 1
AGUAAUCUUUAAAAUUAUUUCGUUCUCCCACUUACCUUG-----CCCCACUGUGCAGUUUUGUCUCUGGCCGUGGCAAUUGCCACUUUUGGC--CCGGAUUGCAUCGUCGCCUUCAUUGU
.(((((((............................(((-----(........))))..........(((((((((....)))))....)))--).)))))))................. ( -23.10)
>DroYak_CAF1 10797 116 + 1
AAAAAUCUUC-AGUUUAUUUAUUUCACUCACUUCCUUUUUCCA-UCCCACUGUGCAGUUUUGUUUCUAGUCGUGGCAAUUGCCACUUUUGGC--CCGGAUUGCAUCGUCGCCUUCAUUGU
..........-................................-....((.((((((((..(...((((..(((((....)))))..)))).--)..)))))))).))............ ( -20.20)
>DroPer_CAF1 14007 111 + 1
-------AUU-CAUAUGCCUUCCCUGCCCAAAAAAUAGCUCCCCACCCACUGUGCGGGGCUGUC-CUCGUCCUGGCAAUUGCCACUUUUACCCUCUGCAUUGCAUCGUCGUCUUCAUUGU
-------...-...((((......(((.......((((((((.(((.....))).)))))))).-.......((((....))))............)))..))))............... ( -21.90)
>consensus
AAUAAUCUUG_UAUAUAUUUCCCUUACUCAUUCCAUUCAUCCA_UCCCACUGUGCAGUUUCGUCUCUGGCCGUGGCAAUUGCCACUUUUGGC__CCGGAUUGCAUCGUCGCCUUCAUUGU
................................................((.(((((((((.(...((((..(((((....)))))..))))...).))))))))).))............ (-18.60 = -18.38 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:57 2006