Locus 3969

Sequence ID 2L_DroMel_CAF1
Location 11,587,249 – 11,587,342
Length 93
Max. P 0.804874
window6258

overview

Window 8

Location 11,587,249 – 11,587,342
Length 93
Sequences 6
Columns 116
Reading direction reverse
Mean pairwise identity 79.47
Mean single sequence MFE -18.56
Consensus MFE -13.50
Energy contribution -13.50
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.51
Structure conservation index 0.73
SVM decision value 0.63
SVM RNA-class probability 0.804874
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11587249 93 - 22407834
------CUACCCAGCCACCAAGCGAA-CCACUCACUCAACCC-----------AUGGAAAUCCAGCAUGCGUUGG-----CCAGAGCAUAUUUUUGCAUAAAGUUUAUGCAAACAU
------.......(((((((.((((.-....)).........-----------.(((....))))).)).).)))-----)...........((((((((.....))))))))... ( -17.90)
>DroSec_CAF1 41533 85 - 1
--------------CCACCCAGCGAA-CCACACACCCAACCC-----------AUGAAAACCCAGCAUGCGUUGG-----CCAGAGCAUAUUUUUGCAUAAAGUUUAUGCAAACAU
--------------.......(((..-...)....(((((.(-----------(((.........)))).)))))-----.....)).....((((((((.....))))))))... ( -15.70)
>DroSim_CAF1 44169 97 - 1
--CUAACUACCCAGCCACCCAGCGAA-CCACACACCCAACCC-----------AUGAAAACCCAGCAUGCGUUGG-----CCAGAGCAUAUUUUUGCAUAAAGUUUAUGCAAACAU
--...........((......))...-........(((((.(-----------(((.........)))).)))))-----............((((((((.....))))))))... ( -16.50)
>DroEre_CAF1 72348 93 - 1
--C----UACCCAGCCGCCCAUCGAA-ACAGCCACCCAACCC-----------AUGGAAGCCCAGCAUGCGUUGG-----CCAGAGCAUAUUUUUGCAUAAAGUUUAUGCAAACAU
--.----...................-...(((..(((((.(-----------(((.........)))).)))))-----...).)).....((((((((.....))))))))... ( -17.50)
>DroYak_CAF1 43168 96 - 1
--CAACUUACCCAGCCAGCCAUCGCA-ACU-CAACUCAACCC-----------AUGGAAACCCAGCAUGCGUUGG-----CCAGAGCAUAUUUUUGCAUAAAGUUUAUGCAAACAU
--...........(((.((((.((((-...-...........-----------.(((....)))...)))).)))-----)..).)).....((((((((.....))))))))... ( -19.97)
>DroAna_CAF1 56055 116 - 1
GCCAAACCACUCACCCACCCACCUAAGCCACCCACUCAAUGCCGUCGCCCUGUGUGUUAACCCAGCAUGCGUUGGCCUGGCCAGAGCAUAUUUUUGCAUAAAGUUUAUGCAAACAU
..................................(((...((((..(((.((((((((.....))))))))..))).))))..)))......((((((((.....))))))))... ( -23.80)
>consensus
__C___CUACCCAGCCACCCAGCGAA_CCACCCACCCAACCC___________AUGGAAACCCAGCAUGCGUUGG_____CCAGAGCAUAUUUUUGCAUAAAGUUUAUGCAAACAU
..................................................................((((.((((.....)))).))))...((((((((.....))))))))... (-13.50 = -13.50 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:02 2006