Locus 3967

Sequence ID 2L_DroMel_CAF1
Location 11,583,868 – 11,583,967
Length 99
Max. P 0.657374
window6256

overview

Window 6

Location 11,583,868 – 11,583,967
Length 99
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 82.50
Mean single sequence MFE -28.15
Consensus MFE -21.59
Energy contribution -20.95
Covariance contribution -0.64
Combinations/Pair 1.12
Mean z-score -1.60
Structure conservation index 0.77
SVM decision value 0.26
SVM RNA-class probability 0.657374
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11583868 99 + 22407834
UGGAAUCG----------------AGCAAAUGCCGAAGGCAGUGC-----CUUUUCAACGCUGACGGCGUGCAAAUGAGAAAAUUCAUUAUUUAACAUUAAUUAGGGCUUAUUAUGCACA
........----------------.......((((....(((((.-----........))))).))))(((((((((((....((.((((........)))).))..)))))).))))). ( -22.90)
>DroPse_CAF1 40086 111 + 1
UGGAAACA-------CGGCGCCGGAGACUGUGCCGAAGGCAGUGG--UGCCUUUUCAACGCUGACGGCGUGUAAAUGAGAAAAUUCAUUAUUUAACAUUAAUUAAGGCUUAUUAUGCACA
((....))-------((((((.(....).))))))((((((....--))))))......((.....))(((((((((((....((.((((........)))).))..)))))).))))). ( -33.70)
>DroSim_CAF1 40902 104 + 1
UGGAAUCG----------------AGGAAAUGCCGAAGGCAGUGCCUUGCCUUUUCAACGCUGACGGCGUGCAAAUGAGAAAAUUCAUUAUUUAACAUUAAUUAGGGCUUAUUAUGCACA
(((((.((----------------(((...((((...))))...)))))...)))))..((.....))(((((((((((....((.((((........)))).))..)))))).))))). ( -27.20)
>DroEre_CAF1 68989 99 + 1
UGGAAUCG----------------AGAAAAUGCCGAAGGCAAUGC-----CUGUUCAGCGCUGACGGCGUGCAAAUGAGAAAAUUCAUUAUUUAACAUUAAUUAGGGCUUAUUAUGCACA
........----------------.......((((.((((...))-----))..(((....)))))))(((((((((((....((.((((........)))).))..)))))).))))). ( -23.20)
>DroAna_CAF1 50574 112 + 1
UGAAAAAGGUAAAAACA-------ACGCAGCGCCGAUGGCAAUGA-AGGCCUCUUCGUCGCUGACGGCGUGUAAAUGAGAAAAUUCAUUAUUUAACAUUAAUUAAGGCUUAUUAUGCACA
.................-------..(((((((((.((((.((((-((....)))))).)))).))))))...((((((....((.((((........)))).))..)))))).)))... ( -28.20)
>DroPer_CAF1 40033 111 + 1
UGGAAACA-------CGGCGCCGGAGACUGUGCCGAAGGCAGUGG--UGCCUUUUCAACGCUGACGGCGUGUAAAUGAGAAAAUUCAUUAUUUAACAUUAAUUAAGGCUUAUUAUGCACA
((....))-------((((((.(....).))))))((((((....--))))))......((.....))(((((((((((....((.((((........)))).))..)))))).))))). ( -33.70)
>consensus
UGGAAACG________________AGAAAAUGCCGAAGGCAGUGC__UGCCUUUUCAACGCUGACGGCGUGCAAAUGAGAAAAUUCAUUAUUUAACAUUAAUUAAGGCUUAUUAUGCACA
...............................((((..(((..((...........))..)))..))))(((((((((((....((.((((........)))).))..)))))).))))). (-21.59 = -20.95 +  -0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:06:00 2006