Locus 3963

Sequence ID 2L_DroMel_CAF1
Location 11,575,120 – 11,575,238
Length 118
Max. P 0.500000
window6249

overview

Window 9

Location 11,575,120 – 11,575,238
Length 118
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 84.49
Mean single sequence MFE -28.15
Consensus MFE -19.58
Energy contribution -19.75
Covariance contribution 0.17
Combinations/Pair 1.10
Mean z-score -2.06
Structure conservation index 0.70
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11575120 118 + 22407834
ACUUAAUGAAAUUUCUGCUUAUGCAAAUUCGCUUGUUGUUGACACAUAAACAAGGCGAAGACAUCAAUAAUAAAGGCUAUUUGGCCGCAAAUAA--AGGCCAGAGAUGAAGUCAUUGAAC
..(((((((.((((((((((.(((...((((((..(((((........)))))))))))...............((((....))))))).....--))).)))))))....))))))).. ( -31.60)
>DroPse_CAF1 31548 98 + 1
GCCUAAUGAAAUUUCUGCUUAUGCGAAUUCGUUUGUUGUUGACACAUAAACGAGACAAAGACAUCAAUAAUGGAG----------------------GGCCAGAGAUGAAGUCAUUGAAC
...((((((.((((((((((.......(((((((((((....)).))))))))).......(((.....)))..)----------------------)).)))))))....))))))... ( -20.60)
>DroEre_CAF1 60199 118 + 1
ACUUAAUGAAAUUUCUGCUUAUGCGAAUUCGCUUGUUGUUGACACAUAAACAAGGCGAAAACAUCAAUAAUAAAGGCUAUUUGGCCGCAAAUAG--AGGCCAGAGAUGAAGUCAUUGAAC
..(((((((.((((((((((.(((...((((((..(((((........)))))))))))...............((((....))))))).....--))).)))))))....))))))).. ( -32.70)
>DroYak_CAF1 30751 118 + 1
ACUUAAUGAAAUUUCUGCUUAUGCGAAUUCGCUUGUUGUUGACACAUAAACAAGUCGAAGACAUCAAUAAUAAAGGCUAUUUGGGCGCAAAUAG--AGGCCAGAGAUGAAGUCAUUGAAC
..(((((((.((((((((((..(((....))).((((.(((((..........))))).)))).............(((((((....)))))))--))).)))))))....))))))).. ( -29.70)
>DroAna_CAF1 41510 120 + 1
ACUUAAUGAAAUUUCUGCUUAUGCGAAUUCGCUUGUUGUUGACACAUAAACAAGCCGGGGACAUCAAUAAUAAGGGCCAUUUGGCCGCAAAUAGAGAGGCCAGAGAUGAAGUCAUUGAAC
..(((((((.((((((((((.(((.......(((((((((((..(........)..(....).)))))))))))((((....))))))).......))).)))))))....))))))).. ( -33.70)
>DroPer_CAF1 31380 98 + 1
GCCUAAUGAAAUUUCUGCUUAUGCGAAUUCGUUUGUUGUUGACACAUAAACGAGACAAAGACAUCAAUAAUGGAG----------------------GGCCAGAGAUGAAGUCAUUGAAC
...((((((.((((((((((.......(((((((((((....)).))))))))).......(((.....)))..)----------------------)).)))))))....))))))... ( -20.60)
>consensus
ACUUAAUGAAAUUUCUGCUUAUGCGAAUUCGCUUGUUGUUGACACAUAAACAAGACGAAGACAUCAAUAAUAAAGGCUAUUUGGCCGCAAAUAG__AGGCCAGAGAUGAAGUCAUUGAAC
..(((((((.((((((((((..(((....)))((((((((((.....................)))))))))).......................))).)))))))....))))))).. (-19.58 = -19.75 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:54 2006