Locus 3961

Sequence ID 2L_DroMel_CAF1
Location 11,569,696 – 11,569,808
Length 112
Max. P 0.614014
window6246

overview

Window 6

Location 11,569,696 – 11,569,808
Length 112
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 90.52
Mean single sequence MFE -29.26
Consensus MFE -25.54
Energy contribution -24.93
Covariance contribution -0.61
Combinations/Pair 1.11
Mean z-score -1.44
Structure conservation index 0.87
SVM decision value 0.16
SVM RNA-class probability 0.614014
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11569696 112 + 22407834
--------GAGCAUAAAUUUGCAAAGUGCCGGGCCUCGGUUAGUGCAUAACUUUUGUGGCAUGCCAAAAGCCACAAAACAGCAAAGGCAUUGCCGUCAUGAAUAAAGCACUCAGAUUCAC
--------..((.....(((((...(((((..((....))..).))))...(((((((((.........)))))))))..)))))(((...)))............))............ ( -28.40)
>DroPse_CAF1 25942 119 + 1
CGAAAGCCGAGCAUAAAUUUGCAAAGUGCCGAGCAUCGGUUAGUGCAUAACUUUUGUGGCAUGCCAAAAGCCACA-AACAGCAAAGGCAUUGCCAUCAUGAAUAACGCACUCGCACUCGC
(((.(((((((((......)))....(((...)))))))))(((((........(((((((((((....((....-....))...)))).))))).))........))))).....))). ( -32.09)
>DroSim_CAF1 24132 112 + 1
--------GAGCAUAAAUUUGCAAAGUGCCGGGCCUCGGUUAGUGCAUAACUUCUGUGGCAUGCCAAAAGCCACAAAACAGCAAAGGCAUUGCCAUCAUGAAUAAAGCACUCAGAUUCAC
--------..(((......))).....((((.....)))).(((((.....((((((((((((((....((.........))...)))).))))).)).)))....)))))......... ( -27.10)
>DroEre_CAF1 54793 112 + 1
--------GAGCAUAAAUUUGCAAAGUGCCGUGCCUUGGUUAGUGCAUAACUUCUGUGGCAUGCCAAAAGCCACAAAACAGCAAAGGCAUUGCCGUCAUGAAUAAAGCACUCAGAUUCAC
--------..(((......)))..(((((.((((((.....)).))))...((((((((((((((....((.........))...)))).))))).)).)))....)))))......... ( -27.60)
>DroAna_CAF1 36421 112 + 1
--------GAGCAUAAAUUUGCAAAGUGCCGAGCAUCGGUUAGUGCAUAACUUUUGUGGCAUGCCAAAAGCCACAAAACAGCAAAGGCAUUGCCGUCAUGAAUAACCUACUCACAUUCAC
--------..(((......)))..((((..(((....(((((...(((.(((((((((((.........))))))))).......(((...))))).)))..)))))..))).))))... ( -28.30)
>DroPer_CAF1 26113 119 + 1
CGAAAGCCGAGCAUAAAUUUGCAAAGUGCCGAGCAUCGGUUAGUGCAUAACUUUUGUGGCAUGCCAAAAGCCACA-AACAGCAAAGGCAUUGCCAUCAUGAAUAACGCACUCGCACUCGC
(((.(((((((((......)))....(((...)))))))))(((((........(((((((((((....((....-....))...)))).))))).))........))))).....))). ( -32.09)
>consensus
________GAGCAUAAAUUUGCAAAGUGCCGAGCAUCGGUUAGUGCAUAACUUUUGUGGCAUGCCAAAAGCCACAAAACAGCAAAGGCAUUGCCAUCAUGAAUAAAGCACUCACAUUCAC
........(((........((((....((((.....))))...))))....((((((((((((((....((.........))...)))).))))).)).))).......)))........ (-25.54 = -24.93 +  -0.61)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:51 2006