Locus 396

Sequence ID 2L_DroMel_CAF1
Location 1,214,175 – 1,214,278
Length 103
Max. P 0.726899
window629

overview

Window 9

Location 1,214,175 – 1,214,278
Length 103
Sequences 5
Columns 104
Reading direction forward
Mean pairwise identity 93.91
Mean single sequence MFE -37.12
Consensus MFE -34.45
Energy contribution -34.74
Covariance contribution 0.29
Combinations/Pair 1.03
Mean z-score -1.18
Structure conservation index 0.93
SVM decision value 0.41
SVM RNA-class probability 0.726899
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 1214175 103 + 22407834
ACCCGCCGAGUCUUUAAGUGGCUCGAAUGGCUUCCAUUGCCUCGCAGCUCGGCUGGACGCCCUCAUUUGGGAUCCGGACUCAGGACUCCGGAUUGCAUGAGAC-
.((.((((((.((....(.(((...(((((...)))))))).)..)))))))).)).....((((..((.((((((((........)))))))).))))))..- ( -40.30)
>DroSec_CAF1 9841 103 + 1
ACCCGCCGAGUCUUUAAGUGGCUCGAAUGGCUUCCAUAGCCUCGCAGCUCCGCUGGACGCCCUCAUUUGGGAUCCGGACUCAGGACUCCGGAUUGCAUGAGAC-
......((((((.......))))))...(((.((((.(((......)))....)))).)))((((..((.((((((((........)))))))).))))))..- ( -37.10)
>DroSim_CAF1 9896 103 + 1
ACCCGCCGAGUCUUUAAGUGGCUCGAAUGGCUUCCAUAGCCUCGCAGCUCCGCUGGACGCCCUCAUUUGGGAUCCGGACUCAGGACUCCGGAUUGCAUGAGAC-
......((((((.......))))))...(((.((((.(((......)))....)))).)))((((..((.((((((((........)))))))).))))))..- ( -37.10)
>DroEre_CAF1 9340 95 + 1
ACCCGCCGAGUCUUUAAGUGCCUCGAAUGGCUUCCAUAG--------CUCCGCUGGACGCCCUCAUUUGGGAUCCGGACUGAGGACUCCGGAUUGCAUGAGAC-
.((.((.(((.((......(((......)))......))--------))).)).)).....((((..((.((((((((........)))))))).))))))..- ( -33.10)
>DroYak_CAF1 10155 104 + 1
ACCCGCCGAGUCUUUAAGUGGCUCGAAUGGCUUCCAUAGCCUCGCUGCUCCGCUGGACGCCCUCAUUUGGGAUCCGGACUCGGGACUCCGGAUUGCAUGGGACU
.(((((((((((.......))))))...((((.....))))..))((((((.(((((..(((......))).)))))....((....)))))..))).)))... ( -38.00)
>consensus
ACCCGCCGAGUCUUUAAGUGGCUCGAAUGGCUUCCAUAGCCUCGCAGCUCCGCUGGACGCCCUCAUUUGGGAUCCGGACUCAGGACUCCGGAUUGCAUGAGAC_
......((((((.......))))))...(((.((((.(((......)))....)))).)))((((..((.((((((((........)))))))).))))))... (-34.45 = -34.74 +   0.29)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:56 2006