| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 11,560,374 – 11,560,479 |
| Length | 105 |
| Max. P | 0.987992 |
| Location | 11,560,374 – 11,560,479 |
|---|---|
| Length | 105 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 67.40 |
| Mean single sequence MFE | -22.27 |
| Consensus MFE | -11.77 |
| Energy contribution | -11.40 |
| Covariance contribution | -0.37 |
| Combinations/Pair | 1.29 |
| Mean z-score | -2.13 |
| Structure conservation index | 0.53 |
| SVM decision value | 2.10 |
| SVM RNA-class probability | 0.987992 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11560374 105 - 22407834 AAAAAUGCAAUGAAUGUUGCUGGCCGUAAAGGAG-AUGGCAGAAUAUUGAGAGCCUUCGAGGCUGCAAA-AG------------GUG-GGGUGGAAAAAAAAAUUGCAAAUGGAUACAUG .....((((((..((.(..((.(((((.......-)))))......(((..((((.....)))).))).-.)------------)..-).))..........)))))).(((....))). ( -22.30) >DroSec_CAF1 20005 107 - 1 AAAAAUGCAAUGAAUGUUGCUGGCCGUAAAGAAG-AUGGCAGAAUAUUGAGAGCCUUCGAGGCUGCAAAAAG------------GUGGGGGUGGAAAAAAAAAUUGAAAAUGGAUACAGG .....(((..(.((((((.(((.((((.......-))))))))))))).).((((.....))))))).....------------.................................... ( -18.20) >DroEre_CAF1 50380 93 - 1 AAAAAUGCAAUGAAUGUUGUUGGCCGUGCAGAAG-AUGGCAGAAUAUUGACGGCCAUCGAGGCU----------------------G-GGCUGGA---AAAUAUGGAAAAUGUAUACAGG ....(((((....(((((.(..(((..((....(-(((((.(........).))))))...)).----------------------.-)))..).---.)))))......)))))..... ( -23.90) >DroAna_CAF1 31905 117 - 1 AAAAUUUCAAUGUACGUGGUUGCUCGUAAAGGAGAAUGGGUGAGUAUUGAGAGCCAUUCAGGCUC-AAAAGGAUAUAUGAAAGGGCACGGGCAAGGCAGAGGAAUAAAAAUAAAG--AAA ...(((((..(((......((((((((......((((((.(..........).))))))..((((-................)))))))))))).)))..)))))..........--... ( -24.69) >consensus AAAAAUGCAAUGAAUGUUGCUGGCCGUAAAGAAG_AUGGCAGAAUAUUGAGAGCCAUCGAGGCUG_AAA_AG____________GUG_GGGUGGAAAAAAAAAUUGAAAAUGGAUACAGG ......(((((....)))))..(((((........)))))...........((((.....))))........................................................ (-11.77 = -11.40 + -0.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:47 2006