Locus 3958

Sequence ID 2L_DroMel_CAF1
Location 11,557,361 – 11,557,459
Length 98
Max. P 0.860793
window6242

overview

Window 2

Location 11,557,361 – 11,557,459
Length 98
Sequences 6
Columns 98
Reading direction forward
Mean pairwise identity 83.71
Mean single sequence MFE -31.78
Consensus MFE -25.12
Energy contribution -25.82
Covariance contribution 0.70
Combinations/Pair 1.22
Mean z-score -2.47
Structure conservation index 0.79
SVM decision value 0.83
SVM RNA-class probability 0.860793
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11557361 98 + 22407834
UUCGUUUGCCCGGCUUUGUUCAGCUGGGCAAAGCUUAAACUUUGGUACUUGUCCUGCGCAUAAGUCAAACACGUGCCAGGAAGAAGUUUUCAAGUUUU
....(((((((((((......)))))))))))....((((((..(.((((.(((((.((((..(.....)..)))))))))..)))).)..)))))). ( -35.70)
>DroPse_CAF1 18342 95 + 1
ACUGUUUGUGGAGCCUGG---UGUUGGGCAAAGUUUAAACUUUGCUGCUUGUCCUGGGCAUAAGUCAAACACGUGCCAGGAGCAAGUUGCCAAGUCCU
.........(((.(.(((---(....((((((((....))))))))(((((((((((.(((..(.....)..))))))))).))))).)))).)))). ( -33.30)
>DroSec_CAF1 16941 98 + 1
UUCGGUUGCCCGGCUUUGUUCAGCUGGGCAAAGUUUAAACUUUGGUACUUGUCCUGCGCAUAAGUCAAACACGUGCCAGGAAGAAGUUUUCAAGUUUU
.....((((((((((......)))))))))).....((((((..(.((((.(((((.((((..(.....)..)))))))))..)))).)..)))))). ( -34.80)
>DroSim_CAF1 16905 98 + 1
UUCGUUUGCCCGGCUUUGUUCAGCUGGGCAAAGUUUAAACUUUGGUACUUGCCCUGCGCAUAAGUCAAACACGUGCCAGGAAGAAGUUUUCAAGUUUU
....(((((((((((......)))))))))))....((((((..(.((((..((((.((((..(.....)..))))))))...)))).)..)))))). ( -32.60)
>DroAna_CAF1 28978 98 + 1
UUUGUUUGUUCAGCUCACUUUAGUUGGGAAAAGUUUAAACUUUGGUACUUGUCCUGCGCAUAAGUCAAACACGUGCCCGGAAGAAGUUGCCAACUUUU
........(((((((......)))))))(((((((..(((((.(((((.(((...((......))...))).)))))(....))))))...))))))) ( -21.00)
>DroPer_CAF1 18318 95 + 1
ACUGUUUGUGGAGCCUGG---UGUUGGGCAAAGUUUAAACUUUGCUGCUUGUCCUGGGCAUAAGUCAAACACGUGCCAGGAGCAAGUUGCCAAGUCCU
.........(((.(.(((---(....((((((((....))))))))(((((((((((.(((..(.....)..))))))))).))))).)))).)))). ( -33.30)
>consensus
UUCGUUUGCCCAGCUUUGUUCAGCUGGGCAAAGUUUAAACUUUGGUACUUGUCCUGCGCAUAAGUCAAACACGUGCCAGGAAGAAGUUGCCAAGUUUU
....((((((((((........))))))))))....((((((.((.((((.(((((.((((..(.....)..)))))))))..)))).)).)))))). (-25.12 = -25.82 +   0.70)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:46 2006