Locus 3955

Sequence ID 2L_DroMel_CAF1
Location 11,524,837 – 11,524,929
Length 92
Max. P 0.577693
window6238

overview

Window 8

Location 11,524,837 – 11,524,929
Length 92
Sequences 6
Columns 92
Reading direction reverse
Mean pairwise identity 82.10
Mean single sequence MFE -34.18
Consensus MFE -19.58
Energy contribution -20.42
Covariance contribution 0.83
Combinations/Pair 1.20
Mean z-score -2.20
Structure conservation index 0.57
SVM decision value 0.09
SVM RNA-class probability 0.577693
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11524837 92 - 22407834
AGCCGGAGCCACCUACCACCCAGCCGGGCAAAUUCCAGCCGGAGCCUCAUACCAUCCGGCAGGUCAAUUGCCGGCUGGUGCUUCAUACCACC
....(((((..........((((((((.(((...((.((((((...........)))))).))....))))))))))).)))))........ ( -36.00)
>DroSec_CAF1 6546 92 - 1
AGCCGGAGCCACCUACCACCCAGCCGGGCAAAUUCCAGCCGGAGCCUCAUACCAUCCGGCAGGUCAUUUGCCGGCUGGAGCUUCAUACCAUC
....(((((..........((((((((.(((((.((.((((((...........)))))).))..))))))))))))).)))))........ ( -38.20)
>DroSim_CAF1 6189 92 - 1
AGCUGGAGCCACCUACCACCCAGCCGGGCAAAUUCCAGCCGGAGCCUCAUACCAUCCGGCAGGUCAUUUGCCGGCUGGAGCUUCAUACCAUC
((((((((....)).))..((((((((.(((((.((.((((((...........)))))).))..))))))))))))))))).......... ( -38.90)
>DroEre_CAF1 5993 92 - 1
AGCCGGAGCCACGUACCACCCAGCGGGGCAAGUUCCAGCCGGAGCAUCCUACCAUCCUGCGGGUCACUUGCCGGCGGGAGCUUCGUACCACC
(((.((((((.(((........))).)))..(((((....))))).))).....((((((.(((.....))).))))))))).......... ( -34.10)
>DroYak_CAF1 6494 92 - 1
AGCCGGAGCCACCUAUCACCCAACGGGUCAAUUGCCAGCGGGAGCUUCGUACCACCCAGCGGGUCAAGUGCCCCACGGAGCCAGCUACUAUC
(((.((..((.......((((...((((....(((.(((....)))..)))..))))...))))...(((...)))))..)).)))...... ( -26.60)
>DroAna_CAF1 2485 92 - 1
AGCCGGAGCCACCUACCAUCCGGCUGGACAAAUUCCCCCAGGCGCCACCUAUCACCCGGCUGGUCAUCUGCCGGCAGGGGCCACCUACCAUC
(((((((...........)))))))(((.....)))...(((.(((.(((.....(((((.........))))).))))))..)))...... ( -31.30)
>consensus
AGCCGGAGCCACCUACCACCCAGCCGGGCAAAUUCCAGCCGGAGCCUCAUACCAUCCGGCAGGUCAUUUGCCGGCUGGAGCUUCAUACCAUC
.((.((((....)).))..((.(((((.(((((.((.((.(((...........))).)).))..)))))))))).)).))........... (-19.58 = -20.42 +   0.83)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:42 2006