Locus 3951

Sequence ID 2L_DroMel_CAF1
Location 11,519,828 – 11,519,922
Length 94
Max. P 0.961888
window6231

overview

Window 1

Location 11,519,828 – 11,519,922
Length 94
Sequences 5
Columns 97
Reading direction forward
Mean pairwise identity 71.89
Mean single sequence MFE -16.92
Consensus MFE -5.65
Energy contribution -6.17
Covariance contribution 0.52
Combinations/Pair 1.16
Mean z-score -2.14
Structure conservation index 0.33
SVM decision value 1.53
SVM RNA-class probability 0.961888
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11519828 94 + 22407834
AGCGAUGAAAUAACCCAGAUAAGUCAAAUCAGACGUGUCAAAAUUGAACAAUAAAAAUUAAAGUUUUUA-AUUUAUUGG--GGCAUUUCAAAAUUCU
.....((((((..((((((((.(((......))).))))............(((((((....)))))))-......)))--)..))))))....... ( -20.70)
>DroSec_CAF1 832 79 + 1
AGCGAAGAAAUAACCCAGAUAAGUCAAAUCAGACGUGUCAAAAUUGAACAAUA-----------------AUUUAUUGG-CGGCAUUUCAAAAUUUU
......(((((..((((((((.(((......))).)))).((((((.....))-----------------))))..)))-.)..)))))........ ( -13.70)
>DroSim_CAF1 668 80 + 1
AGCGAAGAAAUAACCCAGAUAAGUCAAAUCAGACGUGUCAAAAUUGAACAAUA-----------------AUUUAUUGGGGGGCAUUUCAAAAUUUU
......(((((..(((.((((.(((......))).)))).........(((((-----------------...))))).)))..)))))........ ( -18.10)
>DroEre_CAF1 791 94 + 1
AGAAGGGAAAAAUCCCAGAUAAAUCAAAUUAGAUGUGUCAAAAUUGUACAAAA--AAUUACAAGUUUUAAACCUUUUGG-GGGUAUUUCCAAUUUUU
.....(((((.(((((.((((.(((......))).))))....(((((.....--...)))))...............)-)))).)))))....... ( -20.40)
>DroYak_CAF1 869 88 + 1
A----AGAAAAAUCCCAGCUGAAUCAAAUCAGAUGUGUCAAAAUUUUACACAA--AAUUACAAGUUUUA-GCUUAUUGG-GCGUAUUUAU-UUAUUU
.----........(((((((((......)))).(((((.........))))).--......((((....-)))).))))-).........-...... ( -11.70)
>consensus
AGCGAAGAAAUAACCCAGAUAAGUCAAAUCAGACGUGUCAAAAUUGAACAAUA__AAUUA_A__UUUUA_AUUUAUUGG_GGGCAUUUCAAAAUUUU
......((((...(((.((((.(((......))).)))).........(((((....................)))))..)))..))))........ ( -5.65 =  -6.17 +   0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:35 2006