Locus 3950

Sequence ID 2L_DroMel_CAF1
Location 11,519,472 – 11,519,592
Length 120
Max. P 0.868449
window6230

overview

Window 0

Location 11,519,472 – 11,519,592
Length 120
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 92.58
Mean single sequence MFE -31.38
Consensus MFE -27.44
Energy contribution -26.00
Covariance contribution -1.44
Combinations/Pair 1.21
Mean z-score -1.45
Structure conservation index 0.87
SVM decision value 0.86
SVM RNA-class probability 0.868449
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11519472 120 - 22407834
GGUCCGAUCAAAAUCGGCCAACAACUUGGGAUAGCACAUAAUGCCACCCUCACGACGGACUUCUUUGAUCUGGUCAAGAAGUUUAUUGUGUGUUAGAUUACAAUUAUAUACUUCAUCGCG
((.(((((....)))))))((((....(((...(((.....)))..))).(((((..((((((((.(((...)))))))))))..))))))))).......................... ( -31.30)
>DroSec_CAF1 472 120 - 1
GGUCCGAUCAAAAUCGGCCAACAACUUGGGAUAGCACAUAAUGCCACCCUCACGACGGACUUCUUUGAUCUGGUCAAGAAGUUUAUUGUGUGUCAGAUUACAAUUAUAUACUUCAUCGCG
((.(((((....))))))).(((....(((...(((.....)))..))).(((((..((((((((.(((...)))))))))))..))))))))........................... ( -29.80)
>DroSim_CAF1 329 120 - 1
GGUCCGAUCAAAAUCGGCCAACAACUUGGGAUAGCACAUAAUGCCACCCUCACGACGGACUUCUUUGAUCUGGUCAAGAAGUUUAUUGUGUGUCAGAUUACAAUUAUAUACUUCAUCGCG
((.(((((....))))))).(((....(((...(((.....)))..))).(((((..((((((((.(((...)))))))))))..))))))))........................... ( -29.80)
>DroEre_CAF1 435 120 - 1
GGUUCGAUCGAAAUCGGCCAACAACUUGGGAUAGCACAUAAUGCCACCCUUAUGGCGAACUUCUUUGAUCUGGUCAAGAAGUUUGUUAUGCGUCAGAUUGCAACUAUAUAAUUCAUCGCG
(((.((((....)))))))........(((...(((.....)))..)))..((((((((((((((.(((...)))))))))))))))))(((...(((((........)))))...))). ( -31.10)
>DroYak_CAF1 499 120 - 1
GGUUCGAUCAAAAUCGGCCAACAACUUGGGGUAGCACAUAAUGCCACCUUUACGGCGAACUUCUUUGAUCUGGUCAAGAAGUUUGUUGUGUAUCAGAUUACAGGUAUAUACUUUAUCUCG
(((.((((....)))))))....(((((((((.(((.....))).)))).(((((((((((((((.(((...))))))))))))))))))..........)))))............... ( -34.90)
>consensus
GGUCCGAUCAAAAUCGGCCAACAACUUGGGAUAGCACAUAAUGCCACCCUCACGACGGACUUCUUUGAUCUGGUCAAGAAGUUUAUUGUGUGUCAGAUUACAAUUAUAUACUUCAUCGCG
((.(((((....)))))))........(((...(((.....)))..))).(((((..((((((((.(((...)))))))))))..))))).............................. (-27.44 = -26.00 +  -1.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:34 2006