| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 1,213,515 – 1,213,609 |
| Length | 94 |
| Max. P | 0.914078 |
| Location | 1,213,515 – 1,213,609 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 76.56 |
| Mean single sequence MFE | -35.93 |
| Consensus MFE | -16.29 |
| Energy contribution | -15.93 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.26 |
| Mean z-score | -2.39 |
| Structure conservation index | 0.45 |
| SVM decision value | 1.09 |
| SVM RNA-class probability | 0.914078 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 1213515 94 + 22407834 GCCGU---GGCUAAAAAAGUUUCGAGUUGCGCUUUUGGAAAGUGCAGAA-------GGCGGGA----------AUAAGUAGCUAAAGUGGUUGCCCCUUCC--ACUUG---GAAGUGG-G (((((---(((((......(..((..((((((((.....))))))))..-------..))..)----------.....))))))...))))..((((((((--....)---)))).))-) ( -33.50) >DroPse_CAF1 12620 112 + 1 GCAGUUGGGGCGAAAAAAGUUUCGUGUUGCGUUUUUCGAGAGUGCAGAAGGCAGAAGGCAGGAGGCAGGAGACAUAAGUAGCCAAAGUGGUGGCCCCCUGCUUA-------CUACUCA-A (((..((..((.......))..))...))).........((((((.....))((.(((((((.(((.(....).......(((.....))).))).))))))).-------)))))).-. ( -36.00) >DroSim_CAF1 9225 94 + 1 GCCGU---GGCUAAAAAAGUUUCGAGUUGCGCUUUUGGAAAGUGCAGAA-------GGCGGGA----------AUAAGUAGCUAAAGUGGUUGCCCCUUCC--ACUGG---GAAGUGG-G (((((---(((((......(..((..((((((((.....))))))))..-------..))..)----------.....))))))...))))..((((((((--....)---)))).))-) ( -33.10) >DroEre_CAF1 8716 94 + 1 GCCGU---GGCUAAAAAAGUUUCGAGUUGCGCUUUUGGAAAGUGCAGAA-------GGCGGGC----------AUAAGCAGCCAAAGUGGCUGCCCCUUCC--AUUCG---GAAGUGG-G ((((.---.(((..((....))..)))..)((((((.(......).)))-------))).)))----------....((((((.....))))))(((((((--....)---)))).))-. ( -35.90) >DroYak_CAF1 9489 95 + 1 GCCGU---GGCUAAAAAAGUUUCGAGUUGCGCUUUUCGAAAGUGCAGAA-------GGCGGGA----------AUAAGUAGCCAAAGUGGCUGCCCCUUCC--ACUCG---GAUGUGGGG (((((---(((((......(..((..((((((((.....))))))))..-------..))..)----------.....))))))...))))..((((.(((--....)---))...)))) ( -36.80) >DroPer_CAF1 12468 112 + 1 GCAGUUGGGGCGAAAAAAGUUUCGUGUUGCGUUUUUGGAGAGUGCAGAA-------GGCAGGAGGCAGGAGACAUAAGUAGCCAAAGUGGUGGCCCCCUGCUCACUGCUCACUGCUCA-A (((..((..((.......))..))...))).......((((((((((..-------((((((.(((.(....).......(((.....))).))).))))))..))))..))).))).-. ( -40.30) >consensus GCCGU___GGCUAAAAAAGUUUCGAGUUGCGCUUUUGGAAAGUGCAGAA_______GGCGGGA__________AUAAGUAGCCAAAGUGGUUGCCCCUUCC__ACUCG___GAAGUGG_G (((((....))...............((((((((.....)))))))).........)))..................((((((.....)))))).......................... (-16.29 = -15.93 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:34:55 2006