Locus 3949

Sequence ID 2L_DroMel_CAF1
Location 11,506,666 – 11,506,766
Length 100
Max. P 0.819020
window6229

overview

Window 9

Location 11,506,666 – 11,506,766
Length 100
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 79.20
Mean single sequence MFE -27.79
Consensus MFE -16.58
Energy contribution -17.78
Covariance contribution 1.20
Combinations/Pair 1.44
Mean z-score -1.97
Structure conservation index 0.60
SVM decision value 0.67
SVM RNA-class probability 0.819020
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11506666 100 - 22407834
AUCUCCACAAUGUCUGUUUCCGAUUCGGGUUUUUCGUGUAAAGGUGGCGCAGUUCCUUUAGUAGUACUUAUCGUACUAUUGGUAUUUCCAGGCGUUGUGU
.....(((((((((((..((((...))))......((((.......)))).......((((((((((.....))))))))))......))))))))))). ( -28.70)
>DroSec_CAF1 572 100 - 1
AUCUCCACAAUGUCUGUUUCUAAUUCGGGUUUUUCGUGUAAAGGUGGCACAGUUCCUUGAGUGGUAGUUAUCGUACUAUUGGUAUUUCCAGGCGUUGUGU
.....(((((((((((......(((((((...((.((((.......))))))...)))))))((((((......))))))........))))))))))). ( -26.10)
>DroSim_CAF1 572 100 - 1
AUCUCCACAAUGUCUGUUUCUAAUUCGGGUUUUUCGUUUAAAGGUGGCACAGUUCCUUGAGUGGUACUUAUCGUACUAUUUGUAUUUCCAGGCGUUGGGU
....((.(((((((((........................((((..........))))(((((((((.....))))))))).......))))))))))). ( -23.90)
>DroEre_CAF1 3120 100 - 1
AUCUCCACAAUGUCUGCUUCUAAUUCGGCUUCUUCGUGUAAAGGUGGUGCAGUUCCUUUAGUAGUACUUGUCGUACUAUUGGUAUUGCCAUUUGUUGUGU
.....((((((..(..(((.((...(((.....)))..)).)))..).(((((.((...((((((((.....)))))))))).))))).....)))))). ( -23.80)
>DroYak_CAF1 578 100 - 1
AUUUCCACUAUGUCGGUUUCUACUUCGGAUUUUUCGUGUAAAGGUGGCGCAGUUCCUUUAGUAGUACUUAUCGUACUAUUGGUAUUGCCAGGCGUUGUGU
.....(((.((((((((...(((...(((...((.((((.......)))))).)))..(((((((((.....))))))))))))..))).))))).))). ( -25.30)
>DroAna_CAF1 47300 94 - 1
AUCUCCACGAUUUCCGGCUCUAUUUCAGCUUCUUUGGAAGAAGGUGGUGGAGCAGCGGAAGUGCUAGAAGUUGA------UUUAUUGUCGGGAGUUGUGG
....((((((((((((((..((..(((((((((.................((((.(....))))))))))))))------..))..)))))))))))))) ( -38.92)
>consensus
AUCUCCACAAUGUCUGUUUCUAAUUCGGGUUUUUCGUGUAAAGGUGGCGCAGUUCCUUUAGUAGUACUUAUCGUACUAUUGGUAUUGCCAGGCGUUGUGU
.....(((((((((((...................((((.......)))).......((((((((((.....))))))))))......))))))))))). (-16.58 = -17.78 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:33 2006