Locus 3945

Sequence ID 2L_DroMel_CAF1
Location 11,501,992 – 11,502,083
Length 91
Max. P 0.645420
window6225

overview

Window 5

Location 11,501,992 – 11,502,083
Length 91
Sequences 5
Columns 98
Reading direction reverse
Mean pairwise identity 86.87
Mean single sequence MFE -22.42
Consensus MFE -15.49
Energy contribution -16.04
Covariance contribution 0.55
Combinations/Pair 1.00
Mean z-score -1.95
Structure conservation index 0.69
SVM decision value 0.23
SVM RNA-class probability 0.645420
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11501992 91 - 22407834
AUGGCAAAUGGCAAUGGCAAAUGGCAGAUGCCGA-------CUGCCGAAUGCAAAAUAGGCGCAAAUAGAAAUCUGUCAAAGGAUUUGGCAAUGUUUC
.((((..((.(((.(((((..((((....)))).-------.)))))..)))...))..)).))....(((((.((((((.....))))))..))))) ( -23.90)
>DroSec_CAF1 67774 71 - 1
AUGGCAAAUGG-------------CAGAU--------------GCCGAAUGCAAAAUAGGUGCAAAUAGAAAUCUGUCGAAGGAUUUGGCAAUGUUUC
.((.(((((((-------------(((((--------------..(...((((.......))))....)..))))))).....))))).))....... ( -15.90)
>DroSim_CAF1 72133 85 - 1
AUGGCAAAUGG------CAAAUGGCAGAUGCCGA-------CUGCCGAAUGCAAAAUAGGUGCAAAUAGAAAUCUGUCGAAGGAUUUGGCAAUGUUUC
.(((((..((.------(....).))..))))).-------.((((((((.(...((((((..........))))))....).))))))))....... ( -23.50)
>DroEre_CAF1 72713 84 - 1
AUGGCAAAUGG------C-AAUGGCAGAUGCCGA-------CUGCCGAAUGCAAAAUAGGUGCAAAUAGAAAUCUGUCGAAGGAUUUGGCAAUGUUUC
.(((((..((.------(-...).))..))))).-------.((((((((.(...((((((..........))))))....).))))))))....... ( -21.60)
>DroYak_CAF1 71675 91 - 1
AUGGCAAAUGG------C-AAUGGCAGAUGCCGACUGCCGACUGCCGAAUGCAAAAUAGGUGCAAAUAGAAAUCUGUCGAAGGAUUUGGCAAUGUUUC
.(((((..(((------(-(.((((....))))..)))))..)))))..((((.......))))....(((((.((((((.....))))))..))))) ( -27.20)
>consensus
AUGGCAAAUGG______C_AAUGGCAGAUGCCGA_______CUGCCGAAUGCAAAAUAGGUGCAAAUAGAAAUCUGUCGAAGGAUUUGGCAAUGUUUC
..((((...............((((....))))..........(((((((.(...((((((..........))))))....).)))))))..)))).. (-15.49 = -16.04 +   0.55)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:29 2006