Locus 3943

Sequence ID 2L_DroMel_CAF1
Location 11,494,949 – 11,495,056
Length 107
Max. P 0.970800
window6223

overview

Window 3

Location 11,494,949 – 11,495,056
Length 107
Sequences 3
Columns 108
Reading direction forward
Mean pairwise identity 76.32
Mean single sequence MFE -15.95
Consensus MFE -11.89
Energy contribution -11.57
Covariance contribution -0.33
Combinations/Pair 1.17
Mean z-score -1.82
Structure conservation index 0.75
SVM decision value 1.66
SVM RNA-class probability 0.970800
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11494949 107 + 22407834
CAGAUAUUAAUAUUAACCAAAUUCAUUACCGCUUACACUUAAGUUUACUUAUUUGAAUUAUAUUGGUUUUAUAUUUAAGAAUACCGCCGCUAAAGCUGCCCGAAA-AA
........(((((.(((((((((((.....(((((....))))).........)))))....))))))..)))))..........((.((....)).))......-.. ( -12.24)
>DroSec_CAF1 58819 88 + 1
AAA--------------------UAAUACCGCUUACACUUCGGUUUACUUAUUUGAAUUAUAUUGGUCUUAUAUUUAAGACCACCGCCGCUAAAGCUGCACGAAACUA
(((--------------------(((.((((.........))))....)))))).........((((((((....))))))))..((.((....)).))......... ( -17.80)
>DroSim_CAF1 63572 84 + 1
AAA--------------------UAAUACCGCUUACACUUCGGUUUACUUAUUUGAAUUAUAUUGGUCUUAUAUUUAAGACCACCGCCGCUAAAGCUGCA----ACUA
(((--------------------(((.((((.........))))....)))))).........((((((((....))))))))..((.((....)).)).----.... ( -17.80)
>consensus
AAA____________________UAAUACCGCUUACACUUCGGUUUACUUAUUUGAAUUAUAUUGGUCUUAUAUUUAAGACCACCGCCGCUAAAGCUGCACGAAACUA
.........................................((((((......))))))....((((((((....))))))))..((.((....)).))......... (-11.89 = -11.57 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:27 2006