| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 11,486,634 – 11,486,740 |
| Length | 106 |
| Max. P | 0.838522 |
| Location | 11,486,634 – 11,486,740 |
|---|---|
| Length | 106 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 78.83 |
| Mean single sequence MFE | -31.74 |
| Consensus MFE | -22.59 |
| Energy contribution | -22.95 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.74 |
| SVM RNA-class probability | 0.838522 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11486634 106 - 22407834 UUAAUUUUGUCAUGGGUAUU---CUCA-----------UAUUUGUACUAAUGUCUAUGAUGUCCAUGAUGUUCGUGGUGUCCAUGGUGCUCAUGAUGUUCACGGUGAUGAUCGCCAUGAU ........(((((((..(((---...(-----------((((......)))))....)))..)))))))..(((((((((((((.(((..(.....)..))).)))..)).)))))))). ( -30.60) >DroSec_CAF1 50457 113 - 1 U---UUUUAUCAUGGGAAUU---CUUAUA-CAAAAUAAUAUUUGUGCUAAUGUCUAUGAUGUCCAUGAUGCUCGUGGUGUCCAUGGUGCUCAUGAUGUUCACGGUGAUGCUCGCCAUGAU .---...((((((((..(((---....((-((((......))))))..)))..))))))))..(((((.((((((((...)))))).)))))))....(((.((((.....)))).))). ( -31.10) >DroSim_CAF1 55298 113 - 1 U---UUUUAUCAUGGGUAUU---CUUAUA-CAAAAUAAUAUUUGUGCUAAUGUCUAUGAUGUCCAUGAUGCUCGUGGUGUCCAUGGUGCUCAUGAUGUUCACGGUGAUGCUCGCCAUGAU .---...((((((((..(((---....((-((((......))))))..)))..))))))))..(((((.((((((((...)))))).)))))))....(((.((((.....)))).))). ( -33.40) >DroEre_CAF1 55533 116 - 1 U---UUUUAUCCUGGAUAUAAGACAUUUA-CAAAGAACCCUUAGGGCUAGUGCCUAUGAUGUCCGUGAUGCUCGUGGUGUCCGUGGUGCUCAUGAUGUUCCCGGUGAUGAUCGCCAUGAU .---...((((.(((((((..........-..(((....))).((((....))))...))))))).)))).((((((((.(((.((.((.......)).))))).......)))))))). ( -32.10) >DroYak_CAF1 56183 111 - 1 ---------CUCUAGGUAUAAGAUAAAUAAAAAAGAAUUCUGAGUGCUAAUGCCUGUGAUGUCCGUGAUGCUCGUGGUGUCCAUGGUGCUCAUGGUGUUCUCGGUGAUGAGCGCCAUGAU ---------.(((((((((.((....((.....((....))..)).)).))))))).)).(((((((((((.....)))).))))).))(((((((((((........))))))))))). ( -31.50) >consensus U___UUUUAUCAUGGGUAUU___CUUAUA_CAAAAAAAUAUUUGUGCUAAUGUCUAUGAUGUCCAUGAUGCUCGUGGUGUCCAUGGUGCUCAUGAUGUUCACGGUGAUGAUCGCCAUGAU .......((((((((((((..............................))))))))))))..(((((.((((((((...)))))).)))))))....(((.((((.....)))).))). (-22.59 = -22.95 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:19 2006