Locus 3937

Sequence ID 2L_DroMel_CAF1
Location 11,485,088 – 11,485,194
Length 106
Max. P 0.583246
window6206

overview

Window 6

Location 11,485,088 – 11,485,194
Length 106
Sequences 3
Columns 108
Reading direction forward
Mean pairwise identity 91.93
Mean single sequence MFE -16.77
Consensus MFE -14.89
Energy contribution -14.57
Covariance contribution -0.33
Combinations/Pair 1.09
Mean z-score -1.74
Structure conservation index 0.89
SVM decision value 0.10
SVM RNA-class probability 0.583246
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11485088 106 + 22407834
CAACGGACGUAUAAACAUAUAUA--AUAAUUUUUGCAUAUAAAAAGAUUCAAAUGCAUCUUGUUCUCAAAAAUAUUAGUCAUACAUCUUUUCAGAUCGUUGCUCUAAA
(((((((((((((....))))).--...(((((((........(((((.(....).))))).....)))))))....)))....((((....)))))))))....... ( -13.72)
>DroSec_CAF1 48910 106 + 1
CAGCGGACGUAUAAAUAUAUACAUAUAUAUUUUUGCAUAUAAAAAGAUUCAAAUGCAUCUUAUUCUCAAAAAUAUUAGUCAUACAUCAUUUCAGAUCGUUGC--UAAA
(((((((((((.((((((((....)))))))).))).......(((((.(....).)))))................)))....(((......)))))))).--.... ( -16.60)
>DroSim_CAF1 52692 106 + 1
CAGCGGACGUAUAAAUAUAUACAUAUAUAUUUUUGCAUAUAAAAAGAUUCAAAUGCAUCUUAUUCUCAAAAAUAUUAGUCAUAGAUCUUUUCAGAUCGUUGC--UAAA
.((((((((((.((((((((....)))))))).))).......(((((.(....).)))))................)))...(((((....)))))..)))--)... ( -20.00)
>consensus
CAGCGGACGUAUAAAUAUAUACAUAUAUAUUUUUGCAUAUAAAAAGAUUCAAAUGCAUCUUAUUCUCAAAAAUAUUAGUCAUACAUCUUUUCAGAUCGUUGC__UAAA
(((((((((((((....))))).....((((((((...(((...((((.(....).)))))))...))))))))...)))....(((......))))))))....... (-14.89 = -14.57 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:11 2006