Locus 3936

Sequence ID 2L_DroMel_CAF1
Location 11,484,628 – 11,484,732
Length 104
Max. P 0.851931
window6205

overview

Window 5

Location 11,484,628 – 11,484,732
Length 104
Sequences 4
Columns 112
Reading direction reverse
Mean pairwise identity 87.81
Mean single sequence MFE -24.57
Consensus MFE -20.83
Energy contribution -20.95
Covariance contribution 0.12
Combinations/Pair 1.12
Mean z-score -1.81
Structure conservation index 0.85
SVM decision value 0.79
SVM RNA-class probability 0.851931
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11484628 104 - 22407834
GGAUCAGCUGCUUAAAUGUUAUUUACAAUUUAGAGUGGCAUUGUAUUUGGUUGCCAAAAAAUAAUAUAUAGGUUUAUUUUUGG--------AAGAGUUGUUUGUUGAUAACA
.((((((.(((...((((((((((........))))))))))))).)))))).(((((((..(((......)))..)))))))--------....((((((....)))))). ( -20.70)
>DroSec_CAF1 48426 104 - 1
GUAUCAGCUGCUUAAAUGUUAUUCACAAUAUAGAGUGGCAUUGUAUUCGGUUGCCAAAAAAUAAUCUAUAGGUUUAUUUUUGG--------AAGAGUUGUUUGUUGAUAACA
....((((((..((((((((((((........)))))))))).))..))))))(((((((..((((....))))..)))))))--------....((((((....)))))). ( -26.40)
>DroSim_CAF1 52205 104 - 1
CGAUCAGCUGCUUAAAUGUUAUUCACAAUAUAGAGUGGCAUUGUAUUCGGUUGCCAAAAAAUAACCUAUAGGUUUAUUUUUGG--------AAGAGUUGUUUGUUGAUAACA
....((((((..((((((((((((........)))))))))).))..))))))(((((((..((((....))))..)))))))--------....((((((....)))))). ( -29.00)
>DroYak_CAF1 54107 112 - 1
GGCUCAGCUGAUAAAAAGUUAUUCUCAAUCUAGAGUGGCAUUGUAUUUGGUUGCCAAAAAAUAACCUGUAGGUUUAUUCUUAGAAGCUUCGAAGAGUUGUUCGUUGAUAAUA
....((((..(...((.((((((((......)))))))).))....)..)))).(((..((((((((..((((((........))))))...)).))))))..)))...... ( -22.20)
>consensus
GGAUCAGCUGCUUAAAUGUUAUUCACAAUAUAGAGUGGCAUUGUAUUCGGUUGCCAAAAAAUAACCUAUAGGUUUAUUUUUGG________AAGAGUUGUUUGUUGAUAACA
....((((((....((((((((((........)))))))))).....))))))(((((((..((((....))))..)))))))............((((((....)))))). (-20.83 = -20.95 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:10 2006