| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 11,482,300 – 11,482,398 |
| Length | 98 |
| Max. P | 0.594542 |
| Location | 11,482,300 – 11,482,398 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 81.53 |
| Mean single sequence MFE | -31.72 |
| Consensus MFE | -21.07 |
| Energy contribution | -20.46 |
| Covariance contribution | -0.60 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.66 |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.594542 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11482300 98 + 22407834 ---GGCUCAACCC--CUUCUGGGAAUUUCUUCCUUGGCCGG-------GCUUUGAUUUCGAAUUGGAUUUGAAUUCGGAAUUUUUGGCUUUCAAGGACCGCCGGAGGUUG-------- ---(((.....((--(....))).......(((((((..((-------(((..(((((((((((.......)))))))))))...))))))))))))..)))........-------- ( -32.80) >DroSim_CAF1 49866 98 + 1 ---AACUCAACCC--CUUCUGGGAAUUUCUUCCUUGGCCGG-------GCUUUGAUUUCGAAUUGGAUUUGAAUUCGGAAUUUUUGGCUUUCAAGGACCGCCGGAGGUUG-------- ---....(((((.--..((((((.....).(((((((..((-------(((..(((((((((((.......)))))))))))...))))))))))))...))))))))))-------- ( -31.80) >DroEre_CAF1 52000 98 + 1 ---GACCCAACCC--CUUCUGGGAAUUUCUUCCUUGGCCGG-------GCUUUGAUUUCGAAUUGGAUUUGAAUUCGGAAUUUUUGGCUUUCAAGGACCGCCGGAGGUUG-------- ---....(((((.--..((((((.....).(((((((..((-------(((..(((((((((((.......)))))))))))...))))))))))))...))))))))))-------- ( -32.00) >DroYak_CAF1 51767 98 + 1 ---GACUCAACCC--CUUCUGGGAAUUUCUUCCUUGGCCGG-------GCUUUGAUUUCGAAUUGGAUUUGAAUUCGAAAUUUUUGGCUUUCAAGGACCGCCGGAGGUUG-------- ---....(((((.--..((((((.....).(((((((..((-------(((..(((((((((((.......)))))))))))...))))))))))))...))))))))))-------- ( -32.30) >DroAna_CAF1 42493 112 + 1 ---GACUCAACCC--CUUCUGGGAGUCUCGUCCU-GGCCAGAAAAGCAGCUUUGAUUUCGAAUUGGAUUUGAAUUUGGAAUUUUUGGCUUUCAAGGACCGUCGGAGGUCCGCAGGCAG ---((((....((--(....)))))))..(.(((-(((((((((((...))))(((((((((((.......)))))))))))))))))......(((((......))))).))))).. ( -35.50) >DroPer_CAF1 51694 97 + 1 UCU------GUCUCUGUCCUGAGAGCCACUUCUUUGGCGGA-------GCUUAGAUUUCGAAUUGGAUUUGAAUUGGGAAUUUCUGGCAUUCAAGGGCCGUCGGUCGUUG-------- (((------.((((......))))((((......)))))))-------(((.(((((((.((((.......)))).)))))))..)))...(((.((((...)))).)))-------- ( -25.90) >consensus ___GACUCAACCC__CUUCUGGGAAUUUCUUCCUUGGCCGG_______GCUUUGAUUUCGAAUUGGAUUUGAAUUCGGAAUUUUUGGCUUUCAAGGACCGCCGGAGGUUG________ ...............((((.(((((....))))).(((.(........(((..(((((((((((.......)))))))))))...))).........).)))))))............ (-21.07 = -20.46 + -0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:09 2006