| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 11,477,154 – 11,477,251 |
| Length | 97 |
| Max. P | 0.736508 |
| Location | 11,477,154 – 11,477,251 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 79.09 |
| Mean single sequence MFE | -25.28 |
| Consensus MFE | -17.44 |
| Energy contribution | -17.97 |
| Covariance contribution | 0.53 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.44 |
| SVM RNA-class probability | 0.736508 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11477154 97 - 22407834 GCCUUAUUUAAUUAUCCAUUCU--GCCUACAAGGGCUCCUCGCUAAUAGCGAAAUAAGCUCGGAUCGGAGAGGCAAAAAGAAAUGAGGCAGUCAGAAAG----------- (((((((((.........((((--.((.....(((((..((((.....))))....))))).....))))))........)))))))))..........----------- ( -27.53) >DroPse_CAF1 44445 89 - 1 GCUUUAUUUAAUUAUCCAUUCUGUGCCUAAGAGAGCUCCUCGCUAAUAGCGAAAUAAGCC------GAA----CAAAAAGAAAUGAGACAGCCCUCUGG----------- ...............(((((((..........(.(((..((((.....))))....))))------...----.....))))..(((......))))))----------- ( -11.17) >DroSim_CAF1 44846 97 - 1 GCCUUAUUUAAUUAUCCAUUCU--GCCUACGAGGGCUCCUCGCUAAUAGCGAAAUAAGCUCGAAUCGGAGAGGCAAAAAGAAAUGAGGCAGUCAGACAG----------- (((((((((............(--((((.((((((((..((((.....))))....)))))...)))...))))).....)))))))))..........----------- ( -29.13) >DroEre_CAF1 46646 97 - 1 GCCUUAUUUAAUUAUCUAUUCU--GCCUACAAGGGUUCCUCGCUAAUAGCGAAAUAAGCUCGGAUCGGACAGGCCAAAAGAAAUGAGGCAGUCAGACGG----------- (((((((((..........(((--(((.....(((((..((((.....))))....))))).....)).)))).......)))))))))..........----------- ( -24.63) >DroYak_CAF1 42399 108 - 1 GCCUUAUUUAAUUAUCCAUUCC--GCCUACAAGGGCUCCUCGCUAAUAGCGAAAUAAGCUCGGAUCGGACAGGCAAAAAGAAAUGAGGCAGUCAGACAGUCGGACAGUUG (((((((((......((..(((--(.......(((((..((((.....))))....)))))....))))..)).......))))))))).(((.(.....).)))..... ( -30.52) >DroAna_CAF1 38167 84 - 1 GCUUUAUUUAAUUAUCCCAUCA--GCCUACCAGGGCUCGGGGCUAAUAGCGAACUAAGCCCGG-UCGGAG----AAAAAGAAAUGAGGCCG------------------- (((((((((.....(((.((((--((((....)))))..(((((..(((....))))))))))-).))).----......)))))))))..------------------- ( -28.70) >consensus GCCUUAUUUAAUUAUCCAUUCU__GCCUACAAGGGCUCCUCGCUAAUAGCGAAAUAAGCUCGGAUCGGAGAGGCAAAAAGAAAUGAGGCAGUCAGACAG___________ (((((((((................((.....(((((..((((.....))))....))))).....))............)))))))))..................... (-17.44 = -17.97 + 0.53)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:06 2006