Locus 3930

Sequence ID 2L_DroMel_CAF1
Location 11,470,510 – 11,470,628
Length 118
Max. P 0.500000
window6197

overview

Window 7

Location 11,470,510 – 11,470,628
Length 118
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 93.31
Mean single sequence MFE -24.41
Consensus MFE -19.47
Energy contribution -19.27
Covariance contribution -0.19
Combinations/Pair 1.17
Mean z-score -2.22
Structure conservation index 0.80
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11470510 118 - 22407834
GUGCUGCAUCGAAUAAGGCCUGAAA--AAAGCCUAAUUAAAAAUUAGUGCAGUUUUUAAUUAAGAGAAAUACGAAAAUGAGACUUCAUAACCAGUUGCCAAAUGCGGUGUAAUAAAGCAA
.((((((((((.....((((((...--...(((((((.....))))).))((((((........(....)........)))))).......)))..))).....)))))).....)))). ( -23.69)
>DroPse_CAF1 35602 118 - 1
GCGGUGCAUCGAAUAUGGACUGAAA--AAAGCCUAAUUAAAAAUUAGUGCAGUUUUUAAUUAAGAGAAAUACGAAAAUGAGACUUCAUAACCAGUUGCCAAAUGCGUCGCAAUAAAACAA
(((..(((((((...(((..(((((--(..(((((((.....))))).))..))))))..................(((......)))..))).)))....))))..))).......... ( -23.60)
>DroSec_CAF1 34063 120 - 1
GUGCUGCAUCGCAUAAGGCAUGAAAAAAAAGCCUAAUUAAAAAUUAGUGCAGUUUUUAAUUAAGAGAAAUACGAAAAUGAGACUUCAUAACCAGUUGCCAAAUGCGGUGCAAUAAAGCAA
.(((((((((((((..((((..........(((((((.....))))).))((((((........(....)........))))))...........))))..))))))))).....)))). ( -30.69)
>DroYak_CAF1 35143 118 - 1
GUGCUGCAUCGAAAAAGGCCUGAAA--AAAGCCUAAUUAAAAAUUAGUGCAGUUUUUAAUUAAGAGAAAUACGAAAAUGAGACUUCAUAACCAGUUGCCAAAUGCGGCGCAAUAAAGCAA
(((((((((((.....(((.(....--.).)))((((((((((((.....)))))))))))).........)))...((.((((........))))..))..)))))))).......... ( -26.60)
>DroAna_CAF1 32088 117 - 1
CCGCCGGA-CCAAUAAGGCCUGAAA--AAAGCCUAAUUAAAAAUUAGUGCAGUUUUUAAUUAAGAGAAAUACGAAAAUGAGACUUCAUAACCAGUUGCCAAAUGCGGUGCAAUAAAAAAA
.....(.(-((.((..((((((...--...(((((((.....))))).))((((((........(....)........)))))).......)))..)))..))..))).).......... ( -18.29)
>DroPer_CAF1 36637 118 - 1
GCGGUGCAUCGAAUAUGGACUGAAA--AAAGCCUAAUUAAAAAUUAGUGCAGUUUUUAAUUAAGAGAAAUACGAAAAUGAGACUUCAUAACCAGUUGCCAAAUGCGUCGCAAUAAAACAA
(((..(((((((...(((..(((((--(..(((((((.....))))).))..))))))..................(((......)))..))).)))....))))..))).......... ( -23.60)
>consensus
GCGCUGCAUCGAAUAAGGCCUGAAA__AAAGCCUAAUUAAAAAUUAGUGCAGUUUUUAAUUAAGAGAAAUACGAAAAUGAGACUUCAUAACCAGUUGCCAAAUGCGGCGCAAUAAAACAA
(((((((((.......((((((........(((((((.....))))).))((((((........(....)........)))))).......)))..)))..))))))))).......... (-19.47 = -19.27 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:03 2006