| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 11,461,645 – 11,461,750 |
| Length | 105 |
| Max. P | 0.665633 |
| Location | 11,461,645 – 11,461,750 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 80.60 |
| Mean single sequence MFE | -21.47 |
| Consensus MFE | -14.65 |
| Energy contribution | -14.51 |
| Covariance contribution | -0.14 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.68 |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.665633 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11461645 105 - 22407834 AUACCGUUGGUGGAGC-CCAAAAACAAUAUGUUUUCCAAACG-GCAUUUCCAUUUAUGUUGCAUGUUGUGCACACAUUUCCGCAAAUGCAUUCGC-CA------CCCACCCACA- .....((.(((((...-...(((((.....)))))......(-((..........(((((((((...))))).))))....((....))....))-).------.))))).)).- ( -24.60) >DroVir_CAF1 73070 86 - 1 -----------GGAGC--CAAAAACAAUAUGUUUUCCAAACG-GCAUUUCCAUUUAUGUUGCAUGUUGUGCACACAUUUCCGCAAAUGCACCUACCGAUU--------------- -----------((...--..(((((.....))))).......-((((((.(....(((((((((...))))).))))....).)))))).....))....--------------- ( -15.00) >DroGri_CAF1 102374 100 - 1 -----------GGAGC-ACAAAAACAAUAUGUUUUCCAAACGGGCAUUUCCAUUUAUGUUGCAUGUUGUGCACACAUUUCCGCAAAUGCACCACCUUAUUUAGACCCAUCCU--- -----------((((.-(((.........))).))))....((((((((.(....(((((((((...))))).))))....).)))))).))....................--- ( -19.60) >DroEre_CAF1 25592 104 - 1 GCGCCGUUGGUGGAGC-CCAAAAACAAUAUGUUUUCCAAACG-GCAUUUCCAUUUAUGUUGCAUGUUGUGCACACAUUUCCGCAAAUGCAUUCGCCCAAA----CCC-----CAC ((((((((..(((((.-.((.........))..)))))))))-))..............(((((.(((((..........))))))))))...)).....----...-----... ( -23.00) >DroYak_CAF1 25896 101 - 1 ACACCGUUGGUGGGGC-CCAAAAACAAUAUGUUUUCCAAACG-GCAUUUCCAUUUAUGUUGCAUGUUGUGCACACAUUUCCGCAAAUGCAUUCACCCA------CCC-----CA- ........((((((..-...(((((.....))))).......-((((((.(....(((((((((...))))).))))....).)))))).....))))------)).-----..- ( -25.20) >DroAna_CAF1 24029 100 - 1 -----GUUGGUGGAGCCCCAAAAACAAUAUGUUUUCCAAACG-GCAUUUCCAUUUAUGUUGCAUGUUGUGCACACAUUUCCGCAAAUGCAUUCGC-CA------CCCCCCCAG-- -----...(((((.......(((((.....))))).......-((((((.(....(((((((((...))))).))))....).)))))).....)-))------)).......-- ( -21.40) >consensus _____GUUGGUGGAGC_CCAAAAACAAUAUGUUUUCCAAACG_GCAUUUCCAUUUAUGUUGCAUGUUGUGCACACAUUUCCGCAAAUGCAUUCGCCCA______CCC_____C__ ...........((((........(((((((((...........((((........)))).)))))))))........))))((....)).......................... (-14.65 = -14.51 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:54 2006