Locus 3924

Sequence ID 2L_DroMel_CAF1
Location 11,451,479 – 11,451,579
Length 100
Max. P 0.989549
window6187

overview

Window 7

Location 11,451,479 – 11,451,579
Length 100
Sequences 5
Columns 106
Reading direction forward
Mean pairwise identity 77.65
Mean single sequence MFE -17.24
Consensus MFE -8.62
Energy contribution -8.62
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.62
Structure conservation index 0.50
SVM decision value 2.17
SVM RNA-class probability 0.989549
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11451479 100 + 22407834
CUUCAGCCCAUCAUCAUCUCCAUCU------CUCGGCUACCCGGGCACUCCUCCACUUCUCGUCGCCAUUUGAGAGUCGAGAUUUCAUUGUUGGCUUCCUUUGUCA
....((((((.....(((((...((------(((((....)).(((((.............)).)))....)))))..))))).....))..)))).......... ( -21.22)
>DroSec_CAF1 15314 81 + 1
CUUCAGCCCAUC---GACUCCAUCU------C----------------UCCUCCACUUCUCCUCGCCAUUUGAGAGUCGAGAUUUCAUUGUUGGCUUCCUUUGUCA
....((((...(---((....((((------(----------------..(((((...............)).)))..)))))....)))..)))).......... ( -13.26)
>DroSim_CAF1 17700 81 + 1
CUUCAGCCCAUC---AUCUCCAUCU------C----------------UCCUCCACUUCUCCUCGCCAUUUGAGAGUCGAGAUUUCAUUGUUGGCUUCCUUUGUCA
....((((...(---(.....((((------(----------------..(((((...............)).)))..))))).....))..)))).......... ( -13.16)
>DroEre_CAF1 15744 76 + 1
CUCGAGCACAUC---AUCU---------------------------ACUUCUCCACUUCUCUCCUCCAUCUGAGAGUCGAGAUUUCAUUGUUGGCUUCCUUUGUCA
...((((.((.(---(...---------------------------...((((.(((.(((..........)))))).))))......)).))))))......... ( -15.40)
>DroYak_CAF1 15366 103 + 1
CUUCAGCCCAUC---AUCUCCAUCUCCAUCUCUCGGCUACCCGGGCACUUCUCUACUUCUCCUCUCCAGUUGAGAGUCGAGAUUUCAUUGUUGGCUUCCUUUGUCA
....((((...(---(.....(((((...(((((((((....(((...............)))....)))))))))..))))).....))..)))).......... ( -23.16)
>consensus
CUUCAGCCCAUC___AUCUCCAUCU______C______________ACUCCUCCACUUCUCCUCGCCAUUUGAGAGUCGAGAUUUCAUUGUUGGCUUCCUUUGUCA
..................................................(((.(((.(((..........)))))).)))..........((((.......)))) ( -8.62 =  -8.62 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:53 2006