| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 11,450,240 – 11,450,334 |
| Length | 94 |
| Max. P | 0.699958 |
| Location | 11,450,240 – 11,450,334 |
|---|---|
| Length | 94 |
| Sequences | 4 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 89.57 |
| Mean single sequence MFE | -24.77 |
| Consensus MFE | -21.12 |
| Energy contribution | -20.62 |
| Covariance contribution | -0.50 |
| Combinations/Pair | 1.17 |
| Mean z-score | -1.55 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.699958 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11450240 94 + 22407834 AUCGGUAGUCGAAUUGCUGAUUUGGAGACAAAGCAAUUCGGGAAGUUGAAGGGAGCCGUAAAUCUCGAUGGUCUGCGUGGAUACUUUGGACACU ...(((.(((((((((((...(((....)))))))))))..(((((...(.(.((((((........)))).)).).)....))))).)))))) ( -27.20) >DroSec_CAF1 14067 85 + 1 AUCGGUAGUCGAAUUGCUGAUUUGGAGACAAAGCAAUUCGGGAAGUUGAAGGGAGUCGUAAAUCUUGACAGUCUGCAUGGUUACU--------- ((((((((((((((((((...(((....))))))))))))).............((((.......))))...)))).))))....--------- ( -22.90) >DroSim_CAF1 15046 85 + 1 AUCGGUAGUCGAAUUGCUGAUUUGGAGACAAAGCAAUUCGGGAAGUUGAAGGGAGCCGUAAAUCUCGACGGUCUGCAUGGUUACU--------- ...((((..(((((((((...(((....)))))))))))............(.((((((........)))).)).)..)..))))--------- ( -25.40) >DroEre_CAF1 14497 85 + 1 AUCGGUAGUCGAAUUGCUGAUUUGGAGACAAAGCAAUUGGGGAAGUUGAAGGGGGUCGUAAAUCUCGACGGUCUGCAUGGACACU--------- ........((.(((((((...(((....)))))))))).))...(((.(.(.((..(((........)))..)).).).)))...--------- ( -23.60) >consensus AUCGGUAGUCGAAUUGCUGAUUUGGAGACAAAGCAAUUCGGGAAGUUGAAGGGAGCCGUAAAUCUCGACGGUCUGCAUGGAUACU_________ ....((((((((((((((...(((....)))))))))))))....(((..((((........))))..))).)))).................. (-21.12 = -20.62 + -0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:52 2006