Locus 3920

Sequence ID 2L_DroMel_CAF1
Location 11,436,644 – 11,436,735
Length 91
Max. P 0.644105
window6180

overview

Window 0

Location 11,436,644 – 11,436,735
Length 91
Sequences 6
Columns 105
Reading direction reverse
Mean pairwise identity 76.85
Mean single sequence MFE -39.08
Consensus MFE -22.57
Energy contribution -24.35
Covariance contribution 1.78
Combinations/Pair 1.21
Mean z-score -1.59
Structure conservation index 0.58
SVM decision value 0.23
SVM RNA-class probability 0.644105
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11436644 91 - 22407834
---AGGA-----AGGCGGACCGGGAGCGGGACCGCC------GCCCAAUCCGUUGAUGGGCGCCCGCCCGCCCUUCGGCAUGUUCCCCAACCUGCCGCUCUUCCC
---.(((-----((((((...(((((((((.(.(.(------(((((.((....)))))))).).))))(((....)))..)))))).......)))).))))). ( -44.90)
>DroVir_CAF1 48454 92 - 1
-------------GGCGAAUCGUCAGUCGGUCCGCCAGCCCAGCCCAAUCCGUUGAUUUCUGCGCGACCGCCCUUCGGCAUGUUCCCCAAUCUACCAAUAUUUCC
-------------((.((((........(((((((.((..((((.......))))....))))).))))(((....)))..)))).))................. ( -21.20)
>DroPse_CAF1 469 99 - 1
GGCAGGAGUCGGAGUCGGGCCG---GCGGGUCCGCCC---AAUCCCAAUCCCCUGAUGGGCGCCCGUCCGCCCUUCGGCAUGUUCCCCAAUCUGCCGCUCUUCCC
((((((.((((((...((((.(---(((((..(((((---(.((..........)))))))))))))).)))))))))).((.....)).))))))......... ( -43.90)
>DroSec_CAF1 434 91 - 1
---AGGA-----AGGCGGACCGGGAGCGGGACCGCC------GCCCAAUCCGCUGAUGGGCGCCCGCCCGCCCUUCGGCAUGUUCCCAAACCUGCCGCUCUUUCC
---.(((-----((((((...(((((((((......------.))).....(((((.(((((......))))).)))))..)))))).......)))).))))). ( -43.10)
>DroYak_CAF1 439 91 - 1
---AGGA-----GGGCGGACCGGGAGCGGGACCGCC------GCCCAAUCCGCUGAUGGGCGCCCGCCCGCCCUUCGGCAUGUUCCCCAACCUGCCCCUCUUCCC
---.(((-----((((((..((((.(((....)))(------(((((.((....)))))))))))).)))))))))((((.(((....))).))))......... ( -46.60)
>DroAna_CAF1 438 91 - 1
---GGCC-----AGGUGAGGGGGGAGUAGGCCAGCC------ACCUAAUCCACUGAUGGGCGCCCGACCACCCUUCGGCAUGUUCCCCAACCUGCCGCUCUUCCC
---(((.-----((((..(((((((.((((......------.)))).))).((((.(((.(......).))).))))......)))).)))))))......... ( -34.80)
>consensus
___AGGA_____AGGCGGACCGGGAGCGGGACCGCC______GCCCAAUCCGCUGAUGGGCGCCCGCCCGCCCUUCGGCAUGUUCCCCAACCUGCCGCUCUUCCC
.............(((((...(((((((((.............))).....(((((.(((((......))))).)))))..))))))....)))))......... (-22.57 = -24.35 +   1.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:47 2006