| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 11,430,713 – 11,430,833 |
| Length | 120 |
| Max. P | 0.717215 |
| Location | 11,430,713 – 11,430,804 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 73.18 |
| Mean single sequence MFE | -26.85 |
| Consensus MFE | -14.90 |
| Energy contribution | -16.24 |
| Covariance contribution | 1.34 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.55 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11430713 91 - 22407834 CACUUAAGUAUGAUCCAAGUGCAGCAAAUGAAUGGGGCUGUCCUGCAAAC-------AGGAGACGCAGGAGGCGGAAUCCACUUUUCGCUGGCACUUA ................(((((((((...........(((.((((((....-------.(....))))))))))((((......))))))).)))))). ( -26.90) >DroSec_CAF1 148287 88 - 1 ---UCCAAUAUGAUCCAAGUGCAGCAAAUGAAUGGAGCUGUCCUGCCAAC-------AGGAGACGCAGGAGGCGGAAUCCACUUUUCGCUGGCACUUA ---.............(((((((((...........(((.((((((....-------.(....))))))))))((((......))))))).)))))). ( -27.10) >DroSim_CAF1 155855 88 - 1 ---UCCAAUAUGAUCCAAGUGCAGCAAAUGAAUGGAGCUGUCCUGCCAAC-------AGGAGACGCAGGAGGCGGAAUCCACUUUUCGCUGGCACUUA ---.............(((((((((...........(((.((((((....-------.(....))))))))))((((......))))))).)))))). ( -27.10) >DroEre_CAF1 155919 91 - 1 CACUUAAAUAUGAUGCAGGAGCAGCGAGUGAGUGCAGCUAUCCUGCACAU-------AGGAGACGCAGGAGGCGGAGUCCACUUUUCGCUGGCACUUA ..(((...((((.(((((((..(((..((....)).))).))))))))))-------).)))..((....(((((((......))))))).))..... ( -32.00) >DroYak_CAF1 153876 98 - 1 CACUUAAAUAUGAUCCAGGAGCAGCCAAUGAAUGGAGCCAUCCUGCACAUAGGACAUAGGAGACGCAGGAGGCGGAAUCCACUUUUCGCUGGCACUUA .............((((....((.....))..))))(((.((((((.(....).....(....)))))))(((((((......))))))))))..... ( -28.40) >DroAna_CAF1 134155 82 - 1 ---U----GAUGAUUUAUUUGGA--AAAAGGAGGUCGAGGUAAUAACUUC-------GGGAAAGGCUUGUAGUGCCAUCAACUUUUGGCCAACACGCA ---.----..........((((.--.(((((...(((((((....)))))-------))....(((.......))).....)))))..))))...... ( -19.60) >consensus ___UUAAAUAUGAUCCAAGUGCAGCAAAUGAAUGGAGCUGUCCUGCAAAC_______AGGAGACGCAGGAGGCGGAAUCCACUUUUCGCUGGCACUUA ................((((((..................((((((..................))))))(((((((......))))))).)))))). (-14.90 = -16.24 + 1.34)
| Location | 11,430,733 – 11,430,833 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | reverse |
| Mean pairwise identity | 61.68 |
| Mean single sequence MFE | -30.75 |
| Consensus MFE | -8.23 |
| Energy contribution | -9.24 |
| Covariance contribution | 1.01 |
| Combinations/Pair | 1.40 |
| Mean z-score | -2.21 |
| Structure conservation index | 0.27 |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.717215 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11430733 100 - 22407834 -----------AAUAUAGCUGCAUCUGGUUAAAAGUUCACCACUUAAGUAUGAUCCAAGUGCAGCAAAUGAAUGGGGCUGUCCUGCAAAC-------AGGAGACGCAGGAGGCGGAAU -----------......((((((..(((.((.((((.....))))...))....)))..))))))...........(((.((((((....-------.(....))))))))))..... ( -28.70) >DroSec_CAF1 148307 99 - 1 CGUGGCUUAUAAAUAUAGCUGCAUCUGGUCA------------UCCAAUAUGAUCCAAGUGCAGCAAAUGAAUGGAGCUGUCCUGCCAAC-------AGGAGACGCAGGAGGCGGAAU ((((((((.........((((((..((((((------------(.....)))).)))..)))))).........))))).((((((....-------.(....))))))).))).... ( -35.07) >DroSim_CAF1 155875 99 - 1 CGUGGCUUAUAAAUAUAGCUGCAUCUGGUUA------------UCCAAUAUGAUCCAAGUGCAGCAAAUGAAUGGAGCUGUCCUGCCAAC-------AGGAGACGCAGGAGGCGGAAU ((((((((.........((((((..((((((------------(.....)))).)))..)))))).........))))).((((((....-------.(....))))))).))).... ( -32.87) >DroEre_CAF1 155939 111 - 1 CCUGGCUUAUAAUUAUAGCAUUAUCUUCUUAAAAGCUCUCCACUUAAAUAUGAUGCAGGAGCAGCGAGUGAGUGCAGCUAUCCUGCACAU-------AGGAGACGCAGGAGGCGGAGU ((..(((.........)))...............((.((((.......((((.(((((((..(((..((....)).))).))))))))))-------)(....)...))))))))... ( -33.40) >DroYak_CAF1 153896 107 - 1 CUUCGUUUA-AAUUAUAGC----------UCAAAGCUCUCCACUUAAAUAUGAUCCAGGAGCAGCCAAUGAAUGGAGCCAUCCUGCACAUAGGACAUAGGAGACGCAGGAGGCGGAAU .(((((...-........(----------((...(((((((.......((((...(((((....(((.....))).....)))))..)))).......))))).))..)))))))).. ( -26.14) >DroAna_CAF1 134175 87 - 1 C------UAUAAGUCUGGCCGAUGCCGAUUC------------U----GAUGAUUUAUUUGGA--AAAAGGAGGUCGAGGUAAUAACUUC-------GGGAAAGGCUUGUAGUGCCAU (------(((((((((..(((((.((..(((------------.----.(........)..))--)...))..)))(((((....)))))-------.))..))))))))))...... ( -28.30) >consensus C_UGGCUUAUAAAUAUAGCUGCAUCUGGUUA____________UUAAAUAUGAUCCAAGUGCAGCAAAUGAAUGGAGCUGUCCUGCAAAC_______AGGAGACGCAGGAGGCGGAAU .....................................................((((....((.....))..))))(((.((((((..................)))))))))..... ( -8.23 = -9.24 + 1.01)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:44 2006