| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 11,428,238 – 11,428,328 |
| Length | 90 |
| Max. P | 0.706424 |
| Location | 11,428,238 – 11,428,328 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 82.80 |
| Mean single sequence MFE | -32.15 |
| Consensus MFE | -24.23 |
| Energy contribution | -24.45 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.36 |
| SVM RNA-class probability | 0.706424 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11428238 90 - 22407834 ------------------CUGCGGU--CUGACAACCACCCUGUGGGUGGUAGCGGGCCCAGUUAUUAUGAAUUGCUGCAGCAAAUUGCCAGCAAG---CAACUAGCAACAUCG- ------------------(((.(((--(((.(.(((((((...))))))).)))))))))).......((.(((((((((....))).))))))(---(.....))....)).- ( -33.60) >DroSec_CAF1 145766 83 - 1 ------------------CUGCGGU--CUGACAACCACCCUGUGGGUGGUAGCGGGCCCAGUUAUUAUGAAUUGCUGCU-CAAAUUGCCAGCAAG---CAACUAGCA------- ------------------(((.(((--(((.(.(((((((...))))))).))))))))))..........(((((((.-......).))))))(---(.....)).------- ( -32.40) >DroEre_CAF1 153374 89 - 1 ------------------CUGCGGU--CUGACAACCACCCUGUGGGUGGUAGCGGCCCCAGUUAUUAUGAAUUGCUGCAGCAAAUUGCCGGCAAG---CAACUAGCAACAU-G- ------------------(((.((.--(((.(.(((((((...))))))).)))).)))))....((((..(((((((((....))).))))))(---(.....))..)))-)- ( -29.30) >DroYak_CAF1 151203 92 - 1 ------------------CUGCGGU--CUGACAACCGCCCUGUGGGUGGUAGCGGGCCCAGUUAUUAUGAAUUGCUGCAGCAAAUUGCCAGCGAGC-GCAACUAGCAACAUCA- ------------------(((.(((--(((.(.(((((((...))))))).))))))))))......(((.(((((((((....))).))))))((-.......))....)))- ( -33.50) >DroAna_CAF1 131222 87 - 1 ------------------CUGCGGU--CUAACAACCGCCCUGUGGGUGGUAGCGGGCCCAGUUAUUAUGAAUUGCUGCAGCAAAUUGCCAGCAA------ACCAGCAACAUCA- ------------------(((.(((--((....(((((((...)))))))...))))))))......((..(((((((((....))).))))))------..)).........- ( -28.20) >DroPer_CAF1 175694 114 - 1 CUGUGUGUGUGGGGAGUGCUGUGGUCUCUAACAACCGCCCUGUGGGUGGUAGCGGGCCCAGUUAUUAUGAAUUGCUGCAGCAAAUUGCCGGCAACCAGAAACGAGCAAAAUGGU (((.((.(((.((.(((((((.(((((((....(((((((...))))))))).))))))))).........((((....))))))).)).))))))))................ ( -35.90) >consensus __________________CUGCGGU__CUGACAACCACCCUGUGGGUGGUAGCGGGCCCAGUUAUUAUGAAUUGCUGCAGCAAAUUGCCAGCAAG___CAACUAGCAACAUCG_ ..................(((.(((..(((...(((((((...)))))))..)))))))))..........(((((((((....))).)))))).................... (-24.23 = -24.45 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:43 2006