Locus 3915

Sequence ID 2L_DroMel_CAF1
Location 11,427,213 – 11,427,312
Length 99
Max. P 0.688362
window6172

overview

Window 2

Location 11,427,213 – 11,427,312
Length 99
Sequences 5
Columns 111
Reading direction forward
Mean pairwise identity 85.54
Mean single sequence MFE -22.30
Consensus MFE -16.12
Energy contribution -16.76
Covariance contribution 0.64
Combinations/Pair 1.05
Mean z-score -1.82
Structure conservation index 0.72
SVM decision value 0.32
SVM RNA-class probability 0.688362
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11427213 99 + 22407834
ACAUUUCGAGAGUCCAGCAAAGACACUUGUCUCGAUUUCAGCAGAUUAUCAAUGGAUUCUACGAAUCUAA-AAUGCAGCCAUACAAAAUGAAUGA-----------AAUAU
....((((((((((((....((((....)))).(((.((....))..)))..)))))))).)))).....-....((..(((.....)))..)).-----------..... ( -19.70)
>DroSec_CAF1 144761 111 + 1
ACAUUUCGAGAGUCCAGCAAAGACACUUGUCUCGAUUUCAGUAGAUUAUCAAUGGACUCUACGAAUCUAAAAAUGCAGCCACACAAAAUGAAUGGCAGGCAGGCAGAAUGU
((((((((((((((((....((((....)))).(((.((....))..)))..)))))))).))))(((.....(((.((((..(.....)..))))..)))...))))))) ( -29.80)
>DroSim_CAF1 152279 100 + 1
ACAUUUCGAGAGUCCAGCAAAGACACUUGUCUCGAUUUCAGUAGAUUAUCAAUGGACUCUACGAAUCUAAAAACGCAGUCACACAAAAUGAAUGA-----------AAUAU
....((((((((((((....((((....)))).(((.((....))..)))..)))))))).))))..........((.(((.......))).)).-----------..... ( -21.50)
>DroEre_CAF1 152231 99 + 1
ACAUUUCGAGUGUCCAGCAAAGACACUUGUCUUGAUUUCACUAGACUAUCAAUGGAGUCUACGAAUCUAAAAUGGCAGCAAUACGACUUGAAUGA------------AUAU
.((((.(((((((...((.(((((....)))))(((((...((((((........)))))).)))))..........))...)).))))))))).------------.... ( -22.00)
>DroYak_CAF1 150212 100 + 1
ACAUUUCGAGAGUCCAGCAAAGACACUUGUCUCGAUUCCACUAGACUAUCAAUGGAUUCUGGGAAUCUAUAAAUGCAGCGAUACAAAGUGAAUGA-----------AAUAU
..(((((.((((((((....((((....)))).(((...........)))..)))))))).))))).............................-----------..... ( -18.50)
>consensus
ACAUUUCGAGAGUCCAGCAAAGACACUUGUCUCGAUUUCAGUAGAUUAUCAAUGGACUCUACGAAUCUAAAAAUGCAGCCAUACAAAAUGAAUGA___________AAUAU
....((((((((((((....((((....)))).(((.((....))..)))..)))))))).)))).............................................. (-16.12 = -16.76 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:39 2006