Locus 3914

Sequence ID 2L_DroMel_CAF1
Location 11,426,753 – 11,426,862
Length 109
Max. P 0.546740
window6171

overview

Window 1

Location 11,426,753 – 11,426,862
Length 109
Sequences 5
Columns 109
Reading direction reverse
Mean pairwise identity 88.00
Mean single sequence MFE -17.36
Consensus MFE -10.92
Energy contribution -11.32
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -2.57
Structure conservation index 0.63
SVM decision value 0.03
SVM RNA-class probability 0.546740
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11426753 109 - 22407834
AAAUCCACCGGCCCAAGGUGCAUUCCAUAUUAAUCUAUUUCGAAAAAGCUGAAAAAGAUCCCAUGGGCCCACAACACCCAACCCAACCAAAUAUACAAUUUAAAUUGCA
.........((((((.((......))......((((.(((((.......))))).))))....))))))........................................ ( -17.80)
>DroSec_CAF1 144306 100 - 1
AAAUCCUCCGGCCCAAGGUGCAUUCCAUAUUAACCUAUUUCGAA---------AAAGCUCCCAUGGGCCCACAAAACCCAACCCAACCAAAUAUACAAUUUAAAUUGCA
.........((((((.((.((.(((...((......))...)))---------...)).))..))))))........................................ ( -15.00)
>DroSim_CAF1 151811 109 - 1
AAAUCCUCCGGCCCAAGGUGCAUUCCAUAUUAAUCUAUUUCGAAAAGGCUGAAAAAGCUCCCAUGGGCCCACAAAACCCAACCCAACCAAAUAUACAAUUUAAAUUGCA
.........((((((.((...............((......))...((((.....)))).)).))))))........................................ ( -17.30)
>DroEre_CAF1 151798 97 - 1
AAAUCCUCCGGCCCAAGGUGCAUUCCAUAUUAAUCUAUUUGGAAAAGGCUG------CUC-CAUGGGCCCACAAAAC-----CCAACCAAAUAUACAAUUUAAAUUGCA
.........((((((.((.((((((((.((......)).))))).....))------).)-).))))))........-----........................... ( -23.20)
>DroYak_CAF1 149785 98 - 1
AAAUCCUCCAGCCCAAGGUGCAUUCCAUAUUAAUCUAUUUUGAAAAAGCUG------CUCCCAUGGGCCCACAAAAC-----CCAACCAAAUAUACAAUUUAAAUUGCA
..........(((((.((.(((.......((((......))))......))------).))..))))).........-----........................... ( -13.52)
>consensus
AAAUCCUCCGGCCCAAGGUGCAUUCCAUAUUAAUCUAUUUCGAAAAAGCUG__AAAGCUCCCAUGGGCCCACAAAACCCAACCCAACCAAAUAUACAAUUUAAAUUGCA
.........((((((.((......)).......((......))....................))))))........................................ (-10.92 = -11.32 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:38 2006