Locus 3913

Sequence ID 2L_DroMel_CAF1
Location 11,425,147 – 11,425,246
Length 99
Max. P 0.602355
window6170

overview

Window 0

Location 11,425,147 – 11,425,246
Length 99
Sequences 5
Columns 107
Reading direction reverse
Mean pairwise identity 77.37
Mean single sequence MFE -28.46
Consensus MFE -14.06
Energy contribution -13.66
Covariance contribution -0.40
Combinations/Pair 1.28
Mean z-score -1.85
Structure conservation index 0.49
SVM decision value 0.14
SVM RNA-class probability 0.602355
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11425147 99 - 22407834
UGCAACCGGGUGGGUCCUCCGCAGCUCGUACCCCUUCGAUGCUUCGAUGCACCGAU--------CCUUCGAUCCGCAACUCAGUUAGAUCAUCAAAAUGAUCUAGUU
(((.....((((.(((....(.((((((........))).))).)))).))))(((--------(....)))).)))......(((((((((....))))))))).. ( -27.40)
>DroSec_CAF1 142678 86 - 1
UGCAAUUGGGUGGGUCCUCC-----UCGAACCCCUUCGAUG--------CGCCGAU--------CCUCCGAUCCGCAGUUCAGUUAGAUCAUCAAAAUGAUCUAGUU
(((.((((((.(((((..((-----(((((....))))).)--------.)..)))--------))))))))..)))......(((((((((....))))))))).. ( -25.90)
>DroSim_CAF1 150075 91 - 1
UACAAUUGGGUGGGUCCUCCGCAGCUCGUACCCCUUCGAUG--------CUCCGAU--------CCUCCGAUCCGCAAUUCAGUUAGAUCAUCAAAAUGAUCUAGUU
.......((((.((.....((.((((((........))).)--------)).))..--------...)).)))).........(((((((((....))))))))).. ( -24.20)
>DroEre_CAF1 150195 105 - 1
UGCAACUGGGUGGGUCCUCCGCAGCUCGCAUGCCCCCCAUUUCCCGCUGCUCCCAUGCUCCUG-CCUCCGAUGCCCAG-CCAGUUAGAUCAUCAAAAUGAUCUAGUU
...((((((.(((((.....((((...(((((.....((........))....)))))..)))-).......))))).-))))))(((((((....))))))).... ( -33.00)
>DroYak_CAF1 147530 106 - 1
UGCAACUGGGUGGGUCCUCCGCAGCUUGUACCCCUCCAAUGCGCCGAUCCUCCGAUGCUUCGAUACUCCGAUGCCCAG-GCAGUUAGAUCAUCAAAAUGAUCUAGUU
(((..(((((((((((...((((..(((........)))))))..)))))..(((....)))..........))))))-))).(((((((((....))))))))).. ( -31.80)
>consensus
UGCAACUGGGUGGGUCCUCCGCAGCUCGUACCCCUUCGAUG___CG_U_CUCCGAU________CCUCCGAUCCGCAG_UCAGUUAGAUCAUCAAAAUGAUCUAGUU
......((((.((((.(..........).)))).)))).............................................(((((((((....))))))))).. (-14.06 = -13.66 +  -0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:37 2006