| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 11,424,449 – 11,424,543 |
| Length | 94 |
| Max. P | 0.776188 |
| Location | 11,424,449 – 11,424,543 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 82.07 |
| Mean single sequence MFE | -30.63 |
| Consensus MFE | -22.77 |
| Energy contribution | -22.95 |
| Covariance contribution | 0.18 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.776188 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11424449 94 - 22407834 GUCGCUGAUGCAUUUGCAUGGGCCCCUAAUUUGGGAUCCAUUUUGCAGCGAAUGUUCUUCAAUUAGGGCUUUGGCGAAGGAUUGCAGAUCCG--A-C----- ((((((.((((....)))).)))((((((((..(((..(((((......))))).)))..))))))))....)))...(((((...))))).--.-.----- ( -31.10) >DroPse_CAF1 172619 101 - 1 AGCGCCAAGCCAUUUGCAUGGCUCUUUAAUUUGAACUCCAUUCUGCUGGCAAUGUUCUUCAAUUAGAGACCUG-UGUUGGAUCAUUGAUCAGCGAAUAGAGU ((.((((.((.....)).)))).)).........((((.((((.((((((((((...(((((((((....)))-.)))))).))))).))))))))).)))) ( -30.60) >DroSec_CAF1 141986 94 - 1 GUCGCUGAUGCAUUUGCAUAGGCCCCUAAUUUGGGAUCCAUUUUGCAGCGAAUGUUCUUCAAUUAGGGCUUGGGCGAAGGAUUGCAGAUCCG--A-C----- ((((....(((((((((.(((((((.(((((..(((..(((((......))))).)))..)))))))))))).)))))....))))....))--)-)----- ( -31.30) >DroSim_CAF1 148831 94 - 1 GUCGCUGAUGCAUUUGCAUGGGUCCCUAAUUUGGGAUCCAUUUUGCAGCGAAUGUUCUUCAAUUAGGGCUUGGGCGAAGGAUUGCAGAUCCG--A-C----- .((((((((((....))))(((((((......)))))))......))))))..(((((......))))).........(((((...))))).--.-.----- ( -33.50) >DroEre_CAF1 149538 93 - 1 GUCGCUGAUGCAUUUGUAUGGGCCCC-AAUUUGGAAUCCAUUUUGCAGCGAAUGUUCUUCAAUUAGGGCCUUGGCGAAGGAUUGCAGAUCCA--G-C----- .(((((.((((....))))((((((.-((((.((((..(((((......)))))))))..)))).)))))).))))).(((((...))))).--.-.----- ( -27.80) >DroYak_CAF1 146811 94 - 1 GUCACUGAUGCAUUUGCAUGGGCCCCUAAUUUGGGAUCCAUUUCGCAGCGAAUGUUCUUCAAUUAGGGCCUUGGCGAAGGAUUGCCCAUCCA--A-C----- .....(((.((((((((((((..(((......)))..))))......))))))))...)))....((((.....(....)...)))).....--.-.----- ( -29.50) >consensus GUCGCUGAUGCAUUUGCAUGGGCCCCUAAUUUGGGAUCCAUUUUGCAGCGAAUGUUCUUCAAUUAGGGCCUUGGCGAAGGAUUGCAGAUCCG__A_C_____ .(((((.((((....))))(((.((((((((..(((..(((((......))))).)))..))))))))))).))))).(((((...)))))........... (-22.77 = -22.95 + 0.18)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:36 2006