Locus 3907

Sequence ID 2L_DroMel_CAF1
Location 11,417,540 – 11,417,634
Length 94
Max. P 0.921475
window6159

overview

Window 9

Location 11,417,540 – 11,417,634
Length 94
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 77.76
Mean single sequence MFE -28.62
Consensus MFE -21.78
Energy contribution -22.12
Covariance contribution 0.34
Combinations/Pair 1.15
Mean z-score -1.62
Structure conservation index 0.76
SVM decision value 1.14
SVM RNA-class probability 0.921475
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11417540 94 - 22407834
----------------AAACACUUUGU----UCAGUGUAUUUGCGGCAGGUCGUAUCUCACGGAUACCUUCGACUUGCCGAUGUUUGUAGCCGCUUGUCCCUGACACUUGAGCA
----------------..(((((....----..))))).....((((((((((((((.....)))))....))))))))).........((((..((((...))))..)).)). ( -28.20)
>DroSec_CAF1 135037 110 - 1
AUUCCCUCUUUCACAUAAACACUUUGU----UCAGUGUAUUUGCGGCAGGUCGUAUCUCACGGAUAUCUUCGACUUGCCGAUGUUUGUAGCCGCUUGUCCCUGACACUUGAGCA
............((((..(((((....----..))))).....((((((((((((((.....))))....)))))))))))))).....((((..((((...))))..)).)). ( -29.20)
>DroSim_CAF1 141838 110 - 1
UUUCCCUUUUUCACUUAAACACUUUGU----UCAGUGUAUUUGCGGCAGGUCGUAUCUCACGGAUACCUUCGACUUGCCGAUGUUUGUAGCCGCUUGUCCCUGACACUUGAGCA
..................(((((....----..))))).....((((((((((((((.....)))))....))))))))).........((((..((((...))))..)).)). ( -28.20)
>DroEre_CAF1 142638 98 - 1
CCUCU------------AGCACUUUGU----UCAGUGUACUUGCGGCAGGUCGUAUCUCACGGAUACCCUCGACUUGCCGAUGUCUGCAGCCGCUUGUCCCUGACACUUGAGCA
.....------------.......(((----(((((((((...((((((((((((((.....)))))....)))))))))..))..((....)).........)))).)))))) ( -30.30)
>DroYak_CAF1 139570 110 - 1
UUUCUCUUUUCCAGUUAAGCACUUUGC----UCAGUGUAUUUGCGGCAGGUCGUAUCUCACGGAUACCUUCGACUUGCCUGUGCUUGUAGCCGCUUGUCCCUGACACUUGAGCA
........................(((----(((((((((..(((((((((((((((.....)))))....)))))))).(.((.....)))))..)).....)))).)))))) ( -31.40)
>DroAna_CAF1 120814 87 - 1
----U------------AGCCUUCGGUUCUGUGAGUGUACUUCAAGCAGGUCGUAUCUCACGGAUACC-UCGACUU----------CUAACAGCUUGUCCCUGACACUCGGGCC
----.------------.......(((((...((((((....(((((((((((((((.....))))).-..)))))----------......)))))......))))))))))) ( -24.40)
>consensus
_UUCU___________AAACACUUUGU____UCAGUGUAUUUGCGGCAGGUCGUAUCUCACGGAUACCUUCGACUUGCCGAUGUUUGUAGCCGCUUGUCCCUGACACUUGAGCA
..................(((((..........))))).....((((((((((((((.....)))))....)))))))))............(((((((...))))....))). (-21.78 = -22.12 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:26 2006