Locus 39

Sequence ID 2L_DroMel_CAF1
Location 174,161 – 174,264
Length 103
Max. P 0.911606
window58

overview

Window 8

Location 174,161 – 174,264
Length 103
Sequences 5
Columns 112
Reading direction reverse
Mean pairwise identity 68.00
Mean single sequence MFE -23.24
Consensus MFE -6.33
Energy contribution -6.65
Covariance contribution 0.32
Combinations/Pair 1.50
Mean z-score -2.22
Structure conservation index 0.27
SVM decision value 1.08
SVM RNA-class probability 0.911606
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 174161 103 - 22407834
UUGUCUAUUGGUACAUACAUAUGUA-GUACAUAAACGCAAAUAUACACCUGGGA-------ACGUU-UUACUCCAAGCUGUAAAGGGUCUUUACUAAAGACUCUAGAUUAUU
((((......((((.(((....)))-))))......))))...((((.((.(((-------.....-....))).)).)))).((((((((.....))))))))........ ( -21.60)
>DroSec_CAF1 20828 112 - 1
UUGUCUAUAGGCACAUAAGUACAUAUGUGCAUAUACACAAAUAUACGCCUGGGAACUGGGAACCUUUCAACUCCAAGCUGUAAAGAGUCUUUACUAAAGACUCUACAUUUUU
((((.((((.(((((((......))))))).)))).))))...((((.((.(((..((..(...)..))..))).)).)))).((((((((.....))))))))........ ( -30.90)
>DroSim_CAF1 20948 104 - 1
UUGUCUAUA-GCACAUAUGUACAAAUGUGC------ACAAAUAUACGUCUGGAAACUGGGAACCUUUCAACUCCAAGCUGUAAAGAGUCUUUACUAAAGACUCUACAUUUU-
.........-((((((........))))))------.......((((..((((...((..(...)..))..))))..).))).((((((((.....)))))))).......- ( -24.50)
>DroEre_CAF1 23537 99 - 1
GUGUUUGUAGGUACAUAUGU------------AUACACAAAUAUACGCCAGGGCUUUUUGAACGAUU-UACUUCAAGCUGUAAAGAAUUUUUACUAAACCCUCUUAAUAAUU
((((((((..((((....))------------))..)))))))).....((((.((..((((...((-(((........))))).....))))..)).)))).......... ( -17.60)
>DroYak_CAF1 21499 93 - 1
GUGUUUGUAGGUACAAAUUU------------AUACACAAAUAUACGCCUGGAAACUUUGAACGACU-UACUUCGAGUUGUAAAGAGUCUUUAGUGAGUCUU-----UAAU-
..((((.(((((....((((------------......))))....))))).)))).(((((.((((-((((..((.((.....)).))...))))))))))-----))).- ( -21.60)
>consensus
UUGUCUAUAGGUACAUAUGUA___A_GU_C__AUACACAAAUAUACGCCUGGGAACUGGGAACGUUU_UACUCCAAGCUGUAAAGAGUCUUUACUAAAGACUCUACAUUAUU
...........................................(((((.((((..................)))).)).))).(((((((((...)))))))))........ ( -6.33 =  -6.65 +   0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:23:56 2006