Locus 3897

Sequence ID 2L_DroMel_CAF1
Location 11,400,268 – 11,400,359
Length 91
Max. P 0.635469
window6131

overview

Window 1

Location 11,400,268 – 11,400,359
Length 91
Sequences 5
Columns 105
Reading direction forward
Mean pairwise identity 86.48
Mean single sequence MFE -37.88
Consensus MFE -28.68
Energy contribution -28.20
Covariance contribution -0.48
Combinations/Pair 1.21
Mean z-score -1.66
Structure conservation index 0.76
SVM decision value 0.21
SVM RNA-class probability 0.635469
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11400268 91 + 22407834
AUGGA--------------GGAGGCUCCUCCAGGAGGGCAUAUGGUCAGAGGGAGACGAAUGAACAGUCCAGUCGGUUGGCAUUCAGAGGUAAUGAGCGUUCCAC
.((((--------------((.....))))))((((.((.(((..((....(....)(((((..(((.((....))))).)))))...))..))).)).)))).. ( -30.50)
>DroSec_CAF1 117646 104 + 1
AUGGAGUUGGCCCAGAGGAGGAGGCUCCUCCAGGAGGGCAUAUGGUCAGAGGGACACGGAUGAACGG-CCAGUCGGUUGGCAUCCAGAAGUAAUGAGCGUUCCAC
...((.(..((((...(((((.....)))))....))))....).))...(((((..(((((..(((-((....))))).)))))....((.....))))))).. ( -37.20)
>DroSim_CAF1 124474 105 + 1
AUGGAGUUGGCCCAGAGAAGGAGGCUCCUCCAGGAGGGCAUAUGGUCAGAGGGAGACGGAUGAACAGUCCAGUCGGUUGGCAUCCAGAAGUAAUGAGCGUUCCAC
.(((((..(.(((......)).).)..)))))((((.((.(((..((....(....)(((((..(((.((....))))).))))).))....))).)).)))).. ( -33.80)
>DroEre_CAF1 125142 105 + 1
AUGGAGCUGGCCCAGAGCAGGAGGCUCCUCCUGGAGGGUAUGUGGUCAGAGGGAGACGGAUGGACAGCCCAGUCGGCUGGCAUCCAGGAGUAAUGAGCGUUCCAC
.((((((..((((....((((((....))))))..))))....(.(((...(....)(((((..(((((.....))))).)))))........))).))))))). ( -45.10)
>DroYak_CAF1 121381 105 + 1
AUGGAGUUGGCCCAGAGGAGGAGACUCCUCCAGGAGGGUGUGCGAUCAGAGGGAGACGGAUGAACAGCCCAGUCGGCUGGCAUCCACAAGUAAUGAGCGUUCCAC
.((((....((((.((((((....)))))).....))))..(((.(((...(....)(((((..(((((.....))))).)))))........))).))))))). ( -42.80)
>consensus
AUGGAGUUGGCCCAGAGGAGGAGGCUCCUCCAGGAGGGCAUAUGGUCAGAGGGAGACGGAUGAACAGCCCAGUCGGUUGGCAUCCAGAAGUAAUGAGCGUUCCAC
.((((....((((......((((....))))....))))..(((.(((...(....)(((((..(((.((....))))).)))))........))).))))))). (-28.68 = -28.20 +  -0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:01 2006