| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 11,382,386 – 11,382,503 |
| Length | 117 |
| Max. P | 0.925405 |
| Location | 11,382,386 – 11,382,503 |
|---|---|
| Length | 117 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 91.79 |
| Mean single sequence MFE | -36.32 |
| Consensus MFE | -31.96 |
| Energy contribution | -31.60 |
| Covariance contribution | -0.36 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.88 |
| SVM decision value | 1.17 |
| SVM RNA-class probability | 0.925405 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11382386 117 - 22407834 -AUGAAAUAUAUUAUUGUUCUCAGUGUGUACUAAGUGAACAAUGGGGUUGCAGACUGAGAACGAUAUGCUUCGGCUUCUCGUUUUGAUUUCGGUUUC-GGGGUUUGGUGCCUCCUGCGC -.((((((....(((((((((((((.((((((..((.....))..)).)))).))))))))))))).((....))...........))))))((...-(((((.....)))))..)).. ( -38.40) >DroSec_CAF1 99430 117 - 1 -UUUAACUAUAUUAUUGUUCUAAGUGUACACUAAGUGAACAGUGGGGUUGCAGACUGAGAACGAUAUGCUUCGGCUUCUCGUUUUGAUUUCGGUUUU-GGGGUUUGGUGCCUCCUGCGC -...((((....((((((((..(((....)))....)))))))).))))(((((((((((((((...((....))...)))))).....)))))...-(((((.....))))))))).. ( -33.90) >DroSim_CAF1 104376 117 - 1 -CUUAACUAUAUUAUUGUUCUAAGUGUACACUAAGUGAACAAUGGGGUUGCAGACUGAGAGCGAUAUGCUUCGGCUUCUCGUUUUGAUUUCGGUUUU-GGGGUUUGGUGCCUCCUGCGC -...((((....((((((((..(((....)))....)))))))).))))(((((((((((((((...((....))...)))).....)))))))...-(((((.....))))))))).. ( -33.90) >DroEre_CAF1 102889 118 - 1 GUGAAGCCACAUUAUUGUUCUCAGUGUGCACUAAGUGAACAAUGGGGUUGCAGACUGAGAGCGAUGUGCUUCGGCUUCUCGUUUUGAUUUCGGCUUU-GGGGUUUGGUGCCUCCUGCGC (.((((((....(((((((((((((.((((((..((.....))..)).)))).)))))))))))))......)))))).)............((...-(((((.....)))))..)).. ( -44.90) >DroYak_CAF1 102271 119 - 1 AAUAAGCUAUAUUAUUGUUCUCAGUGUGCAUUAAGUGAACAAUGGGGUUGCAGACUAAGAACGAUGUGCUUCGGCUUCUCGUUUUGAUUUCGGUUUUCGGGGUUUGGUGCCUCCUGCGC ....((((....((((((((.(............).)))))))).))))((((....(((((((...((....))...))))))).............(((((.....))))))))).. ( -30.50) >consensus _AUAAACUAUAUUAUUGUUCUCAGUGUGCACUAAGUGAACAAUGGGGUUGCAGACUGAGAACGAUAUGCUUCGGCUUCUCGUUUUGAUUUCGGUUUU_GGGGUUUGGUGCCUCCUGCGC ....((((....((((((((..(((....)))....)))))))).))))(((((((((((((((...((....))...)))))).....)))))....(((((.....))))))))).. (-31.96 = -31.60 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:48 2006