Locus 3886

Sequence ID 2L_DroMel_CAF1
Location 11,377,399 – 11,377,496
Length 97
Max. P 0.609403
window6114

overview

Window 4

Location 11,377,399 – 11,377,496
Length 97
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 83.12
Mean single sequence MFE -29.93
Consensus MFE -16.86
Energy contribution -17.42
Covariance contribution 0.56
Combinations/Pair 1.12
Mean z-score -2.76
Structure conservation index 0.56
SVM decision value 0.15
SVM RNA-class probability 0.609403
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11377399 97 - 22407834
UAUCCGCUGACCA--GCAAAUAAUUU-UUGCAAAUAUUACAACAAUAUUUCGGUCGGCUGUUCACGAGGGAUUUACCUUUU-------------------GGGGAAGGU-AAAAUGUUUC
..((((((((((.--(((((.....)-))))(((((((.....))))))).)))))))((....))..)))(((((((((.-------------------...))))))-)))....... ( -29.00)
>DroSec_CAF1 94465 96 - 1
UACCCGCUGACCA--GCAAAUAAUUU-UGGCAAAUAUUACAACAAUAUUUCGGUCGGCUGUCCAUGAGGGAAUUACCUUUU-------------------GGGGAAGGU-AAAAUGUU-C
((((.(((((((.--.((((....))-))(.(((((((.....)))))))))))))))(.((((.((((......)))).)-------------------))).).)))-).......-. ( -29.00)
>DroSim_CAF1 99382 97 - 1
UACCCGCUGACCA--GCAAAUAAUUU-UGGCAAAUAUUACAACAAUAUUUCGGUCGGCUGUCCACGAGGGAUUUACCUUUU-------------------GGGGAAGGU-AAAAUGUUUU
((((.(((((((.--.((((....))-))(.(((((((.....)))))))))))))))(.((((.((((......)))).)-------------------))).).)))-)......... ( -29.00)
>DroEre_CAF1 97991 96 - 1
UAGCCGCUGACCA--GCAAAUAAUUU-UGGCAAAUAUUACAACAAUAUUUCGGUCGGCUGUCCAUGAGGGAAUUACCUUUU-------------------GGGGAAGGU-ACAAUGUU-C
..((((((((((.--.((((....))-))(.(((((((.....)))))))))))))))(.((((.((((......)))).)-------------------))).).)))-........-. ( -29.10)
>DroYak_CAF1 97194 96 - 1
UACCCGCUGACCA--GCAAAUAAUUU-UGGCAAAUAUUACAACAAUAUUUCGGUCGGCUGUCCAUGAGGGAAUUACCUUUU-------------------GGGGAAGGU-AAAACGUU-C
((((.(((((((.--.((((....))-))(.(((((((.....)))))))))))))))(.((((.((((......)))).)-------------------))).).)))-).......-. ( -29.00)
>DroAna_CAF1 84505 118 - 1
UAUCCCUUGACCGUUGCAAAUUAUUUCUGGCAAAUAUUACAACAAUAUUUU-GUGACCUGUCCGUGAGGGAAUUGCCCAUUCCUUCCGACCUUCCAAGAGAGGGAUGGCGAUGAUGUU-C
..(((((((((.((..((((.((((..((..........))..)))).)))-)..))..)))...))))))((((((.((((((..(..........)..))))))))))))......-. ( -34.50)
>consensus
UACCCGCUGACCA__GCAAAUAAUUU_UGGCAAAUAUUACAACAAUAUUUCGGUCGGCUGUCCAUGAGGGAAUUACCUUUU___________________GGGGAAGGU_AAAAUGUU_C
..((((((((((...((............))(((((((.....))))))).))))))).......(((((.....))))).....................)))................ (-16.86 = -17.42 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:45 2006