Locus 3884

Sequence ID 2L_DroMel_CAF1
Location 11,375,541 – 11,375,647
Length 106
Max. P 0.558520
window6108

overview

Window 8

Location 11,375,541 – 11,375,647
Length 106
Sequences 5
Columns 107
Reading direction reverse
Mean pairwise identity 91.23
Mean single sequence MFE -31.44
Consensus MFE -25.68
Energy contribution -25.92
Covariance contribution 0.24
Combinations/Pair 1.05
Mean z-score -1.35
Structure conservation index 0.82
SVM decision value 0.05
SVM RNA-class probability 0.558520
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11375541 106 - 22407834
AAAACUGCAGUGUCGAUUGCAGUGGCUUUUCUUACC-CCGGGGACUAACGGUGGUUCCACCGCCCGCCCAACUAUCGACUUUCUUUUCCGAGGCGCCCAAUUAGGCA
...((((((((....))))))))(((........((-....))......((((....))))))).(((......(((...........))))))(((......))). ( -30.80)
>DroSec_CAF1 92620 106 - 1
AAAACUGCAGUGUCGAUUGCAGUGGCUUUUCUUACC-CCGGGGACUAACGGUGGUUCCACCGCCCGCCCAACUAUCAACUUUCCUUUCCAAGGCGCCCAAUUAGACA
...((((((((....))))))))(((..........-...(((.....(((((....)))))....))).............(((.....))).))).......... ( -28.30)
>DroSim_CAF1 97519 106 - 1
AAAACUGCAGUGUCGAUUGCAGUGGCUUUUCUUACC-CCGGGGACUAACGGUGGUUCCACCGCCCGCCCAACUUUCGACUUUCCUUUCCGAGGCGCCCAAUUAGGCA
...((((((((....))))))))(((........((-....))......((((....))))))).(((......(((...........))))))(((......))). ( -30.80)
>DroEre_CAF1 96176 103 - 1
AAAACUGCAGUGUCGAUUGCAGCGGCUUUUCCUCCCCCGGGGGACUAACGGUGGUUCCACCG----CCCAACUAUCGACUUUCCUUUCCAAGGCGCCCAAUUAGGCA
...........((((((.(..(.(((...((((((...)))))).....((((....)))))----)))..).))))))...(((.....))).(((......))). ( -31.50)
>DroYak_CAF1 95241 101 - 1
AAAACUGCAGUGUCGAUUGCAGUGGCUUUUCCUCCC-CAGGGAACUAACGGUGGUUCCACCG----CCCAACAAUCGACUUUCCU-GCCAAGGCGCCCAAUUAGGCU
......((((.((((((((..(.(((.((((((...-.)))))).....((((....)))))----)))..))))))))....))-))......(((......))). ( -35.80)
>consensus
AAAACUGCAGUGUCGAUUGCAGUGGCUUUUCUUACC_CCGGGGACUAACGGUGGUUCCACCGCCCGCCCAACUAUCGACUUUCCUUUCCAAGGCGCCCAAUUAGGCA
...((((((((....))))))))(((..............(((.....(((((....)))))....))).............(((.....))).))).......... (-25.68 = -25.92 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:39 2006