| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 11,372,186 – 11,372,304 |
| Length | 118 |
| Max. P | 0.862470 |
| Location | 11,372,186 – 11,372,304 |
|---|---|
| Length | 118 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 78.71 |
| Mean single sequence MFE | -48.53 |
| Consensus MFE | -31.41 |
| Energy contribution | -32.80 |
| Covariance contribution | 1.39 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.83 |
| SVM RNA-class probability | 0.862470 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11372186 118 - 22407834 AGUGCUUGUUAUUCACCGGCGGAUCCAAACUAGAAGUCGGUGGUCCUGCGGACAUCAGAGCCUGCUGAAAGUCGAGGGGACUGGCAGGAAAACGAUGGGCAUCUAAUGGA--GAGAAACU .(((((..((..((((((((...............))))))))((((((.(((.((((......))))..))).((....)).))))))....))..)))))........--........ ( -38.66) >DroVir_CAF1 82527 118 - 1 AAUGCUUGUUGUUAACCGGCGGAUCGAGGCUAGAGCUGGGCGGGCCUGCCGACAUAAGUGCUUGCUGAAAGUCCAGCGGGCUAGCUGGAAAGCGAUGAGCAUCUGUGAAG--GAUCAGCG ...(((.(((.((...((((((.(((.(((....)))...)))..)))))).((((..(((((..((....((((((......))))))...))..)))))..)))))).--))).))). ( -46.40) >DroGri_CAF1 110023 118 - 1 AGUGCUUGUUAUUCACCGGCGGAUCCAAGCUAGAGCUGGGCGGGCCGGCCGACAUCAAAGCCUGCUGAAAGUCCAGCGGACCAGCUGGAAAUCGAUGUGCAUCUGUGGAG--CAUUGUGG (((((((.........((((.(..((.(((....)))....))..).))))(((((..((....))((...((((((......))))))..))))))).........)))--)))).... ( -39.40) >DroMoj_CAF1 119948 120 - 1 AGUGCUUGUUGUUCACCGGGGGAUCGAGACUGGAGCUGGGUGGCCCGGCGGACAUCAGGGCCUGCUGGAAGUCCAGCGGACUAGCUGGGAAGCGAUGAGCAUCUGCGAAUGCGAUCGGCG (((.((((.(((((.(((((..(((.((.(....))).)))..))))).))))).))))..(((((((....)))))))))).(((((...((.((..((....))..))))..))))). ( -50.40) >DroAna_CAF1 79949 115 - 1 AGUGCUUGUUGUUCACCGGCGGAUCCAGGCUGGAGCUCGGCGGUCCGGCAGACAUGAGAGCCUGCUGGAAGUCGAGCGGACUGGCCGGGAAGCGAUGGGCAUCUAAUGA---GAGGAA-- .(((((..(((((..(((((...(((.....)))(((((((..((((((((.(......).)))))))).)))))))......)))))..)))))..))))).......---......-- ( -57.00) >DroPer_CAF1 109404 118 - 1 AGUGCUUGUUGUUCACGGGCGGGUCCAGGCUGGAGGUCGGCGGCCCGGCGGACAUCAGGGCCUGCUGGAAGUCCAGCGGACUGGCCGGGAACCGAUGGGCAUCUGUGCGA--AAGGGACG .(((((..((((((.(.(((.(((((..((((((..((((((((((...........))))).)))))...))))))))))).))).)))).)))..))))).....(..--..)..... ( -59.30) >consensus AGUGCUUGUUGUUCACCGGCGGAUCCAGGCUAGAGCUCGGCGGCCCGGCGGACAUCAGAGCCUGCUGAAAGUCCAGCGGACUAGCUGGAAAGCGAUGGGCAUCUGUGGAA__GAGCAACG .((((((((((((..(((((.(.(((........(((((((....((((((.(......).))))))...)))))))))).).)))))..)))))))))))).................. (-31.41 = -32.80 + 1.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:38 2006