Locus 3877

Sequence ID 2L_DroMel_CAF1
Location 11,347,570 – 11,347,677
Length 107
Max. P 0.719026
window6097

overview

Window 7

Location 11,347,570 – 11,347,677
Length 107
Sequences 6
Columns 118
Reading direction reverse
Mean pairwise identity 80.62
Mean single sequence MFE -14.65
Consensus MFE -11.47
Energy contribution -11.64
Covariance contribution 0.17
Combinations/Pair 1.00
Mean z-score -1.40
Structure conservation index 0.78
SVM decision value 0.39
SVM RNA-class probability 0.719026
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11347570 107 - 22407834
AAAAUUGAUUUACGCCGGCUAUUUACGCUCAUAAAUUUGUAGCUAUUUAGCGGUUCUCCA---AAACAACCAACAAAUUGUCAACACACAUUCAC--CAAAAACGCCG------CGUA
..........(((((.(((..............(((((((.(((....)))((((.....---....)))).)))))))((......))......--.......))))------)))) ( -18.70)
>DroVir_CAF1 59235 99 - 1
AAAAUUGAUUUACGAU-GCUAUUUACGCUCAUAAAUUUGUAGCUAUUUAGCGGUACCACACA--AAAAACCUACAAAUUGUCAACACAAAC--------AAAAC--AG------CAGA
....(((((....((.-((.......))))...(((((((((((....)))(((........--....)))))))))))))))).......--------.....--..------.... ( -12.70)
>DroGri_CAF1 76735 102 - 1
AAAAUUGAUUUACGAU-GCUAUUUACGCUCAUAAAUUUGUAGCUAUUUAGCGGUAACACACACAAAAAACCAACAAAUUGUCAACACAAAC--------AAAA-------ACAACAGA
....(((((.......-((((..((.(((((......)).)))))..))))(((..............)))........))))).......--------....-------........ ( -12.84)
>DroYak_CAF1 66261 109 - 1
AAAAUUGAUUUACGCCGCCUAUUUACGCUCAUAAAUUUGUAGCUAUUUAGCGGUUCUCCA---AAACAACCAACAAAUUGUCAACACACACACUCAAAGAAAACCCCG------CGUA
..........(((((.((........)).....(((((((.(((....)))((((.....---....)))).)))))))............................)------)))) ( -14.60)
>DroMoj_CAF1 86766 107 - 1
AAAAUUGAUUUACGAC-GCUAUUUACGCUCAUAAAUUUGUAGCUAUUUAGCGGUAACACACAGAAAAAACCUACAAAUUGUCAACACAAAC--------AAAAC--AGCAGCAGCAGA
.............(((-((((..((.(((((......)).)))))..))))(((..............)))........))).........--------.....--.((....))... ( -15.24)
>DroAna_CAF1 57869 104 - 1
AAAAUUGAUUUACGCCGGCUAUUUACGCUCAUAAAUUUGUAGCUAUUUAGCGGUUCUCCA---AAACAACCAACAAAUUGUCAACACACAUUCAC--AAACAACCUCG---------A
....(((((........((((..((.(((((......)).)))))..))))((((.....---....))))........)))))...........--...........---------. ( -13.80)
>consensus
AAAAUUGAUUUACGAC_GCUAUUUACGCUCAUAAAUUUGUAGCUAUUUAGCGGUACCACA___AAAAAACCAACAAAUUGUCAACACAAAC________AAAAC__CG______CAGA
....(((((........((((..((.(((((......)).)))))..))))(((..............)))........))))).................................. (-11.47 = -11.64 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:28 2006