Locus 3875

Sequence ID 2L_DroMel_CAF1
Location 11,345,274 – 11,345,367
Length 93
Max. P 0.539457
window6095

overview

Window 5

Location 11,345,274 – 11,345,367
Length 93
Sequences 6
Columns 97
Reading direction reverse
Mean pairwise identity 81.20
Mean single sequence MFE -17.66
Consensus MFE -11.81
Energy contribution -12.04
Covariance contribution 0.22
Combinations/Pair 1.08
Mean z-score -1.38
Structure conservation index 0.67
SVM decision value 0.01
SVM RNA-class probability 0.539457
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11345274 93 - 22407834
-CGAAAGACCUUUCAUAUUUCAGCCAAUUAGGAAA-ACGAUCGCAACAGCACAUCCAACAAGCAUCACUAAUUGGCAGACGUUUAACACUCCCC--C
-.((((....))))........(((((((((((..-....))((....)).................)))))))))..................--. ( -16.30)
>DroPse_CAF1 77351 82 - 1
-CGAAAGGCAUUUCAUAUUUUAGCCAAUUAGGAGA-ACGAUCGG-----------CAACAAGCAACACUAAUUGGCAGACAUUUAACACUCCCC--C
-.((((....))))........(((((((((((..-....))(.-----------...)........)))))))))..................--. ( -17.00)
>DroEre_CAF1 65752 91 - 1
-CGU-AGGCCUUUCAUAUUUUAGCCAAUUAGGAGA-ACGAUCGCAACAACAGAUCCAACAAGCAUCACUAAUUGGCAGACGUUUAACACUCCC---C
-...-.................(((((((((((..-..((((.........)))).........)).))))))))).................---. ( -15.72)
>DroYak_CAF1 63948 95 - 1
-CGAAAGGCAUUUCAUAUUUUAGCCAAUUAGGAGA-ACGAUCGCAGCAACAGAUCCAACAAGCAUCACUAAUUGGCAGACGUUUAACACUCCCCCUC
-.((((....))))........(((((((((((..-..((((.........)))).........)).)))))))))..................... ( -17.42)
>DroMoj_CAF1 82814 95 - 1
UUGUAUGGCAAUUCAUAUUUUAGCCAAUUAGGGGAAACGAUCUCAAUGGAGCAUCGAACAGACGGCACUAAUUGGCAGGCAUUUAACACUUUCC--C
..((((((....))))))....(((((((((.(....)((((((....))).)))............)))))))))..................--. ( -21.90)
>DroPer_CAF1 77825 82 - 1
-CGAAAGGCAUUUCAUAUUUUAGCCAAUUAGGAGA-ACGAUCGG-----------CAACAAGCUACACUAAUUGGCAGACAUUUAACACUCCCC--C
-.((((....))))........(((((((((((..-....))((-----------(.....)))...)))))))))..................--. ( -17.60)
>consensus
_CGAAAGGCAUUUCAUAUUUUAGCCAAUUAGGAGA_ACGAUCGCAACA_CA_AUCCAACAAGCAUCACUAAUUGGCAGACAUUUAACACUCCCC__C
..((((....))))........(((((((((....................................)))))))))..................... (-11.81 = -12.04 +   0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:26 2006