Locus 3873

Sequence ID 2L_DroMel_CAF1
Location 11,340,445 – 11,340,550
Length 105
Max. P 0.814544
window6093

overview

Window 3

Location 11,340,445 – 11,340,550
Length 105
Sequences 5
Columns 105
Reading direction reverse
Mean pairwise identity 90.00
Mean single sequence MFE -25.09
Consensus MFE -20.68
Energy contribution -21.88
Covariance contribution 1.20
Combinations/Pair 1.14
Mean z-score -1.61
Structure conservation index 0.82
SVM decision value 0.66
SVM RNA-class probability 0.814544
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 11340445 105 - 22407834
GGAGGCCUUAGGUAUGACGAUAGUUUUUCUAAGAUGGCUUUGGGGUAAUCAAUCUAAGUCGGAAGAUUUAAUAGAUAUUAUCGUAGAUAGAAAGGUUUCUAGUUU
(((((((((..((...((((((((...((((.(((.(((....))).)))....((((((....)))))).)))).))))))))..))...)))))))))..... ( -32.30)
>DroSec_CAF1 57630 105 - 1
GGAUGCCUUAGGUAUGGCAAUAGUUUUUGUAAGAUGGCUUUGGGGUAAUCAAUCUAAGACGGAAGAUUUAAUAGAUAUCAUUGUAGACAGAAAGGUUUCUAGUUU
(((.(((((..((...(((((.((.(((((..(((.(((....))).)))....((((.(....).))))))))).)).)))))..))...))))).)))..... ( -20.60)
>DroSim_CAF1 62463 105 - 1
GGAUGCCUUAGGUAUGGCGAUAGUUUUUGUAAGAUGGCUUUGGGGUAAUCAAUCUAAGUCGGAAGAUUUAAUAGAUAUCAUCGUAGACAGAAAGGUUUCUAGUUU
(((.(((((..((...(((((.((.(((((..(((.(((....))).)))....((((((....))))))))))).)).)))))..))...))))).)))..... ( -27.30)
>DroEre_CAF1 61013 103 - 1
GGAGACCUUUUGAAUGGCGAUAGUUUUUGUAAGACGGCUUUG-GGUAAUCAAUCUUAGUCGCACGAUUUAAUAGAUACCAUCA-GGACAGAAAGGUUUCUAGUUU
(((((((((((.......(((.((.(((((.(((((((.(((-((........)))))..)).)).))).))))).)).))).-.....)))))))))))..... ( -23.32)
>DroYak_CAF1 59070 104 - 1
GGAGACCUUUGGUAUGGCGAUAGUUUUUGUAAGAUGGCUUUGGGGUAAUCAAUCUAAGUCUGA-AAUUUAAUAGAUAUCAUCAUGGACAGAAAGGUUUCUAGUUU
((((((((((.(((((..((((....(((......(((((.(((........))))))))...-....)))....))))..)))..))..))))))))))..... ( -21.92)
>consensus
GGAGGCCUUAGGUAUGGCGAUAGUUUUUGUAAGAUGGCUUUGGGGUAAUCAAUCUAAGUCGGAAGAUUUAAUAGAUAUCAUCGUAGACAGAAAGGUUUCUAGUUU
(((((((((..((...(((((.((.(((((..(((.(((....))).)))....((((((....))))))))))).)).)))))..))...)))))))))..... (-20.68 = -21.88 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:24 2006