| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 11,335,098 – 11,335,196 |
| Length | 98 |
| Max. P | 0.905048 |
| Location | 11,335,098 – 11,335,196 |
|---|---|
| Length | 98 |
| Sequences | 3 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 81.42 |
| Mean single sequence MFE | -22.47 |
| Consensus MFE | -17.57 |
| Energy contribution | -17.13 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.11 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.78 |
| SVM decision value | 1.04 |
| SVM RNA-class probability | 0.905048 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11335098 98 - 22407834 AAUAACAAAUUUUUAUCUGAAACAUUCGCC-------GAGGCGAGCGCCAAAGUUUCGGACAUUUGCUCGACCGAGCGUAGACUGAAAAAAAAAAAGAAAAAUAA .........((((((((((((((.(((((.-------...))))).......)))))))).....((((....))))......))))))................ ( -19.90) >DroEre_CAF1 55611 86 - 1 AAUAACAAAUUUUUAUCUGAAACAUUCGCC-------GAGGCGAGCGCCAAAGUUUCGGACAUUUGCUCGACCGAGCGUAGACUGAAA------------UAAAA ........(((((..((((........(((-------(((((..........))))))).)....((((....)))).))))..))))------------).... ( -19.40) >DroAna_CAF1 46726 92 - 1 AAUAACAAAUUUUUAUCUGAAACACUCGCCGGCGAGCGAGGUGAACGCCAAAGUUUUGGACGUUUGCUCGACCGAGCGUAGAAUGAAA-------------AUAA ........(((((((((((.......(((((((((((((.....(((((((....)))).)))))))))).))).)))))).))))))-------------)).. ( -28.11) >consensus AAUAACAAAUUUUUAUCUGAAACAUUCGCC_______GAGGCGAGCGCCAAAGUUUCGGACAUUUGCUCGACCGAGCGUAGACUGAAA_____________AUAA ....((.........((((((((..((..........))(((....)))...)))))))).....((((....)))))).......................... (-17.57 = -17.13 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:22 2006