| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 11,329,856 – 11,329,956 |
| Length | 100 |
| Max. P | 0.999769 |
| Location | 11,329,856 – 11,329,956 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 72.95 |
| Mean single sequence MFE | -37.12 |
| Consensus MFE | -18.82 |
| Energy contribution | -18.94 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.29 |
| Mean z-score | -3.09 |
| Structure conservation index | 0.51 |
| SVM decision value | 4.04 |
| SVM RNA-class probability | 0.999769 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11329856 100 - 22407834 AACUCAGCCAGUAGUAUCUGGAUAUCUGGAUAUAUGGGUAUCUGGGUAUCUGGAUGUAUCCAAGGG----------GGGAUUGGCGGCAUAUUC-------GACCGACUGCAGUUGU ((((((((((((..((((..((((((..(((((....)))))..))))))..))))..(((....)----------)).))))))(((......-------).))...)).)))).. ( -34.90) >DroSec_CAF1 47186 101 - 1 AACUCAGCCAGUAGUAUCUGGAUAUCUGGAUAUCUGGGUAUCUGGGUAUCUGGAUGUGUCCAAGGG---------GGGGAUCGGCGGCAUAUUC-------GACCGACUGCAGUUGU (((((((((.....((((..((((((..(((((....)))))..))))))..))))..(((....)---------)))).(((((((.....))-------).))))))).)))).. ( -37.00) >DroSim_CAF1 47348 101 - 1 AACUCAGCCAGUAGUAUCUGGAUAUCUGGAUAUCUGGGUAAAUGGGUAUCUGGAUGUGUCCAAGGG---------GGGGAUCGGCGGCAUAUUC-------GACCGACUGCAGUUGU ..(((..((((......))))(((((..((((((((......))))))))..)))))......)))---------(.((.(((((((.....))-------).)))))).)...... ( -32.70) >DroEre_CAF1 49407 103 - 1 AACUCACCCGGCA---UCUGGAUAUCUGGAUGUCUAGGUAUCUAGAUAUCUAGAUGUCUAGAUACGU----------GUAUCU-GGAUGUGGCCAAGGGGCUGGCGACGGCAGUUGU ((((..((((((.---(((((((((((((((((((((....)))))))))))))))))))))(((((----------.(....-).))))))))..)))((((....)))))))).. ( -49.80) >DroYak_CAF1 48138 106 - 1 AACUCACCCGGUA---UCUGUAUAUCUGAAUAUCUGUAUAUCUGAAUAUCUGUAUAUCUGGAUAUCUGGAUAUAUGGGUAUCU-AGGCAUAUUC-------GAACGACGGCAGUUGU ((((...(((...---((.((((..(((.((((((((((((((..((((((........))))))..)))))))))))))).)-))..))))..-------))....))).)))).. ( -31.20) >consensus AACUCAGCCAGUAGUAUCUGGAUAUCUGGAUAUCUGGGUAUCUGGGUAUCUGGAUGUCUCCAAGGG_________GGGGAUCGGCGGCAUAUUC_______GACCGACUGCAGUUGU .......((((......))))((((((((((((((((....))))))))))))))))...............................................((((....)))). (-18.82 = -18.94 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:21 2006