| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 11,325,742 – 11,325,839 |
| Length | 97 |
| Max. P | 0.536596 |
| Location | 11,325,742 – 11,325,839 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 78.78 |
| Mean single sequence MFE | -22.33 |
| Consensus MFE | -15.38 |
| Energy contribution | -15.13 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.11 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.536596 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 11325742 97 - 22407834 CCGGAAU------CC-GG--AAGCAGCCGAGCCACUUGGCCAAAUCAUUUUUGUUAUUAGCGAAAAUCGCGUCGAGUGAUUUACUUU------UACUUUUGUCUUACCGCC-C .(((((.------.(-((--(((..((((((...)))))).(((((((((.........(((.....)))...))))))))).....------..))))))..)).)))..-. ( -22.80) >DroPse_CAF1 55541 92 - 1 ---GACU------CC-GCC-UCUCGGUCGAG-CACUUGGCCAAAUCAUUUUUGUUAUUAGCGAAAAUCGCGUCGAGUGAUUUACUUU------UACUUUUGUCUUACUCC--- ---..((------(.-(((-....))).)))-((((((((((((.....))))......(((.....))))))))))).........------.................--- ( -21.30) >DroGri_CAF1 50453 104 - 1 ACUGACUGACUGACU-GGUUGGCUGGCCGGG-CACUUGGCAAAAUCAUUUUUGUUAUUAGCGAAAAUCGCGCUGAGUGAUUUACUUU------UACUUUUGUUUUACGUGC-C .((..(..(((....-)))..)..))...((-(((.((((((((....))))))))...(((.....)))((.((((((.......)------)))))..)).....))))-) ( -25.40) >DroYak_CAF1 43774 104 - 1 CGGAAUC------CUGGG--AAGCAGCCGAG-CACUUGGCCAAAUCAUUUUUGUUAUUAGCGAAAAUCGCGUCGAGUGAUUUACUUUUACUUUUACUUUUGUCUUACUGCCCC .......------..(((--..((((..(((-((((((((((((.....))))......(((.....)))))))))))................((....))))).))))))) ( -22.00) >DroAna_CAF1 38495 91 - 1 CCGGAAU------CC-GU-------CCUCCG-CACUCGGCCAAAUCAUUUUUGUUAUUAGCGAAAAUCGCGUCGAGUGAUUUACUUU------UACUUUUGUCUUACUCCG-C .((((..------..-..-------..))))-((((((((((((.....))))......(((.....))))))))))).........------..................-. ( -21.20) >DroPer_CAF1 55918 92 - 1 ---GACU------CC-GCC-UCUCGGUCGAG-CACUUGGCCAAAUCAUUUUUGUUAUUAGCGAAAAUCGCGUCGAGUGAUUUACUUU------UACUUUUGUCUUACUCC--- ---..((------(.-(((-....))).)))-((((((((((((.....))))......(((.....))))))))))).........------.................--- ( -21.30) >consensus CCGGACU______CC_GG__AAGCGGCCGAG_CACUUGGCCAAAUCAUUUUUGUUAUUAGCGAAAAUCGCGUCGAGUGAUUUACUUU______UACUUUUGUCUUACUCCC_C ................................((((((((((((.....))))......(((.....)))))))))))................................... (-15.38 = -15.13 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:18 2006